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defer.jl
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164 lines (125 loc) · 4.72 KB
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iswritable(dds::DeferDataset) = dds.r.mode != "r"
function metadata(ds::AbstractDataset)
# dimensions
dim = OrderedDict()
unlimited_dims = unlimited(ds)
for (dimname,dimlen) in ds.dim
dim[dimname] = Dict(
:name => dimname,
:length => dimlen,
:unlimited => dimname in unlimited_dims
)
end
# variables
vars = OrderedDict()
for (varname,ncvar) in ds
storage,chunksizes = chunking(ncvar.var)
isshuffled,isdeflated,deflatelevel = deflate(ncvar.var)
checksummethod = checksum(ncvar.var)
vars[varname] = OrderedDict(
:name => varname,
:size => size(ncvar),
:eltype => eltype(ncvar.var),
:attrib => OrderedDict(ncvar.attrib),
:dimensions => dimnames(ncvar),
:chunksize => chunksizes,
:storage => storage,
#:fillvalue => fillvalue(ncvar.var),
:shuffle => isshuffled,
:deflate => isdeflated,
:deflatelevel => deflatelevel,
:checksummethod => checksummethod,
)
end
group = OrderedDict()
for (groupname,ncgroup) in ds.group
group[groupname] = metadata(ncgroup)
end
return OrderedDict(
:dim => dim,
:var => vars,
:attrib => OrderedDict(ds.attrib),
:group => group
)
end
function DeferDataset(TDS,r::Resource,groupname::String,data::OrderedDict)
_boundsmap = Dict{String,String}()
dds = DeferDataset{TDS}(r,groupname,data,_boundsmap)
if (r.mode == "r")
initboundsmap!(dds)
end
return dds
end
function DeferDataset(TDS,filename::AbstractString,mode::AbstractString,info::OrderedDict; kwargs...)
r = Resource(filename,mode,Dict(kwargs),info)
groupname = "/"
return DeferDataset(TDS,r,groupname,info)
end
function DeferDataset(TDS,filename::AbstractString,mode = "r"; kwargs...)
TDS(filename,mode) do ds
info = metadata(ds)
r = Resource(filename,mode,Dict(kwargs),info)
groupname = "/"
return DeferDataset(TDS,r,groupname,info)
end
end
# files are not suppose to be open where using DeferDataset
close(dds::DeferDataset) = nothing
groupname(dds::DeferDataset) = dds.groupname
path(dds::DeferDataset) = dds.r.filename
varnames(dds::DeferDataset) = collect(keys(dds.data[:var]))
function maskingvalue(dds::DeferDataset{TDS}) where TDS
TDS(dds.r.filename,dds.r.mode; dds.r.args...) do ds
maskingvalue(ds)
end
end
function Variable(f::Function, dv::DeferVariable{T,N,TDS}) where {T,N,TDS}
TDS(dv.r.filename,dv.r.mode; dv.r.args...) do ds
f(variable(ds,dv.varname))
end
end
function variable(dds::DeferDataset{TDS},varname::AbstractString) where TDS
data = get(dds.data[:var],varname,nothing)
if data == nothing
error("Dataset $(dds.r.filename) does not contain the variable $varname")
end
T = data[:eltype]
N = length(data[:dimensions])
return DeferVariable{T,N,TDS}(dds.r,varname,data)
end
variable(dds::DeferDataset,varname::Symbol) = variable(dds,string(varname))
dataset(dv::DeferVariable{T,N,TDS}) where {T,N,TDS} =
DeferDataset(TDS,dv.r.filename,dv.r.mode; dv.r.args...)
function DiskArrays.readblock!(dv::DeferVariable{T, N}, aout,indexes::Vararg{OrdinalRange, N}) where {T, N}
Variable(dv) do v
aout .= v[indexes...]
end
end
Base.size(dv::DeferVariable) = dv.data[:size]
dimnames(dv::DeferVariable) = dv.data[:dimensions]
name(dv::DeferVariable) = dv.varname
#----------------------------------------------
dimnames(dds::DeferDataset) = collect(keys(dds.r.metadata[:dim]))
dim(dds::DeferDataset,name::SymbolOrString) =
dds.r.metadata[:dim][String(name)][:length]
unlimited(dd::DeferDataset) = [dimname for (dimname,dim) in dd.data[:dim] if dim[:unlimited]]
attribnames(dds::DeferDataset) = collect(keys(dds.r.metadata[:attrib]))
attrib(dds::DeferDataset,name::SymbolOrString) = dds.r.metadata[:attrib][String(name)]
attribnames(dv::DeferVariable) = collect(keys(dv.data[:attrib]))
attrib(dv::DeferVariable,name::SymbolOrString) = dv.data[:attrib][String(name)]
#------------------------------------------------
groupnames(dds::DeferDataset) = collect(keys(dds.data[:group]))
function group(dds::DeferDataset{TDS},name::SymbolOrString) where TDS
data = dds.data[:group][String(name)]
return DeferDataset(TDS,dds.r,String(name),data)
end
_storage_attributes(dv) = dv.r.metadata[:var][name(dv)]
function chunking(dv::DeferVariable)
sa = _storage_attributes(dv)
return sa[:storage],sa[:chunksize]
end
function deflate(dv::DeferVariable)
sa = _storage_attributes(dv)
return sa[:shuffle],sa[:deflate],sa[:deflatelevel]
end
checksum(dv::DeferVariable) = _storage_attributes(dv)[:checksummethod]