chore: refresh gitattributes and link checks

Co-authored-by: maehr <14755525+maehr@users.noreply.github.com>

Author: Copilot

.gitattributes

@@ -1,5 +1,4 @@
 # Common settings that generally should always be used with your language specific settings
-# generated by https://www.richie-bendall.ml/gitattributes-generator/
 
 # Auto detect text files and perform LF normalization
 *          text=auto
@@ -19,73 +18,6 @@
 *.pdf      diff=astextplain
 *.PDF      diff=astextplain
 *.rtf      diff=astextplain
-*.RTF      diff=astextplain
-*.md       text diff=markdown
-*.mdx      text diff=markdown
-*.tex      text diff=tex
-*.adoc     text
-*.textile  text
-*.mustache text
-*.csv      text
-*.tab      text
-*.tsv      text
-*.txt      text
-*.sql      text
-*.epub     diff=astextplain
-
-# Graphics
-*.png      binary
-*.jpg      binary
-*.jpeg     binary
-*.gif      binary
-*.tif      binary
-*.tiff     binary
-*.ico      binary
-# SVG treated as text by default.
-*.svg      text
-# If you want to treat it as binary,
-# use the following line instead.
-# *.svg    binary
-*.eps      binary
-
-# Scripts
-*.bash     text eol=lf
-*.fish     text eol=lf
-*.sh       text eol=lf
-*.zsh      text eol=lf
-# These are explicitly windows files and should use crlf
-*.bat      text eol=crlf
-*.cmd      text eol=crlf
-*.ps1      text eol=crlf
-
-# Serialisation
-*.json     text
-*.toml     text
-*.xml      text
-*.yaml     text
-*.yml      text
-
-# Archives
-*.7z       binary
-*.gz       binary
-*.tar      binary
-*.tgz      binary
-*.zip      binary
-
-# Text files where line endings should be preserved
-*.patch    -text
-
-#
-# Exclude files from exporting
-#
-
-.gitattributes export-ignore
-.gitignore     export-ignore
-.gitkeep       export-ignore
-
-# Apply override to all files in the directory
-*.md linguist-detectable
-
 # Basic .gitattributes for a python repo.
 
 # Source files
@@ -106,16 +38,8 @@
 *.pickle binary
 *.pyc    binary export-ignore
 *.pyo    binary export-ignore
-*.pyd    binary
-
-# Jupyter notebook
-*.ipynb  text eol=lf
-
-# Note: .db, .p, and .pkl files are associated
-# with the python modules ``pickle``, ``dbm.*``,
-# ``shelve``, ``marshal``, ``anydbm``, & ``bsddb``
-# (among others).
-
+# Apply override to all files in the directory
+*.md linguist-detectable
 # Basic .gitattributes for a R repo.
 
 # Source files
@@ -127,11 +51,10 @@
 *.rds   binary
 *.Rd    text
 *.Rdx   binary
-*.Rmd	  text
-*.R  	  text
+*.Rmd    text
+*.R      text
 *.Rproj text
 *.[Rr]md   linguist-detectable
-
 ## GITATTRIBUTES FOR WEB PROJECTS
 #
 # These settings are for any web project.
@@ -152,189 +75,3 @@
 # Source code
 *.bash            text eol=lf
 *.bat             text eol=crlf
-*.cmd             text eol=crlf
-*.coffee          text
-*.css             text diff=css
-*.htm             text diff=html
-*.html            text diff=html
-*.inc             text
-*.ini             text
-*.js              text
-*.json            text
-*.jsx             text
-*.less            text
-*.ls              text
-*.map             text -diff
-*.od              text
-*.onlydata        text
-*.php             text diff=php
-*.pl              text
-*.ps1             text eol=crlf
-*.py              text diff=python
-*.rb              text diff=ruby
-*.sass            text
-*.scm             text
-*.scss            text diff=css
-*.sh              text eol=lf
-*.sql             text
-*.styl            text
-*.tag             text
-*.ts              text
-*.tsx             text
-*.xml             text
-*.xhtml           text diff=html
-
-# Docker
-Dockerfile        text
-
-# Documentation
-*.ipynb           text eol=lf
-*.markdown        text diff=markdown
-*.md              text diff=markdown
-*.mdwn            text diff=markdown
-*.mdown           text diff=markdown
-*.mkd             text diff=markdown
-*.mkdn            text diff=markdown
-*.mdtxt           text
-*.mdtext          text
-*.txt             text
-AUTHORS           text
-CHANGELOG         text
-CHANGES           text
-CONTRIBUTING      text
-COPYING           text
-copyright         text
-*COPYRIGHT*       text
-INSTALL           text
-license           text
-LICENSE           text
-NEWS              text
-readme            text
-*README*          text
-TODO              text
-
-# Templates
-*.dot             text
-*.ejs             text
-*.erb             text
-*.haml            text
-*.handlebars      text
-*.hbs             text
-*.hbt             text
-*.jade            text
-*.latte           text
-*.mustache        text
-*.njk             text
-*.phtml           text
-*.svelte          text
-*.tmpl            text
-*.tpl             text
-*.twig            text
-*.vue             text
-
-# Configs
-*.cnf             text
-*.conf            text
-*.config          text
-.editorconfig     text
-.env              text
-.gitattributes    text
-.gitconfig        text
-.htaccess         text
-*.lock            text -diff
-package.json      text eol=lf
-package-lock.json text eol=lf -diff
-pnpm-lock.yaml    text eol=lf -diff
-.prettierrc       text
-yarn.lock         text -diff
-*.toml            text
-*.yaml            text
-*.yml             text
-browserslist      text
-Makefile          text
-makefile          text
-
-# Heroku
-Procfile          text
-
-# Graphics
-*.ai              binary
-*.bmp             binary
-*.eps             binary
-*.gif             binary
-*.gifv            binary
-*.ico             binary
-*.jng             binary
-*.jp2             binary
-*.jpg             binary
-*.jpeg            binary
-*.jpx             binary
-*.jxr             binary
-*.pdf             binary
-*.png             binary
-*.psb             binary
-*.psd             binary
-# SVG treated as an asset (binary) by default.
-*.svg             text
-# If you want to treat it as binary,
-# use the following line instead.
-# *.svg           binary
-*.svgz            binary
-*.tif             binary
-*.tiff            binary
-*.wbmp            binary
-*.webp            binary
-
-# Audio
-*.kar             binary
-*.m4a             binary
-*.mid             binary
-*.midi            binary
-*.mp3             binary
-*.ogg             binary
-*.ra              binary
-
-# Video
-*.3gpp            binary
-*.3gp             binary
-*.as              binary
-*.asf             binary
-*.asx             binary
-*.avi             binary
-*.fla             binary
-*.flv             binary
-*.m4v             binary
-*.mng             binary
-*.mov             binary
-*.mp4             binary
-*.mpeg            binary
-*.mpg             binary
-*.ogv             binary
-*.swc             binary
-*.swf             binary
-*.webm            binary
-
-# Archives
-*.7z              binary
-*.gz              binary
-*.jar             binary
-*.rar             binary
-*.tar             binary
-*.zip             binary
-
-# Fonts
-*.ttf             binary
-*.eot             binary
-*.otf             binary
-*.woff            binary
-*.woff2           binary
-
-# Executables
-*.exe             binary
-*.pyc             binary
-
-# RC files (like .babelrc or .eslintrc)
-*.*rc             text
-
-# Ignore files (like .npmignore or .gitignore)
-*.*ignore         text

.lycheerc.toml

@@ -2,7 +2,17 @@
 # https://lychee.cli.rs/configuration/
 
 # Exclude template placeholders from link checking
-exclude = ["USERNAME", "REPO_NAME", "ZENODO_RECORD", "GITHUB_REPO_ID", "FULLNAME", "\\[INSERT CONTACT METHOD\\]"]
+exclude = [
+  "USERNAME",
+  "REPO_NAME",
+  "ZENODO_RECORD",
+  "GITHUB_REPO_ID",
+  "FULLNAME",
+  "\\[INSERT CONTACT METHOD\\]",
+  "https://www.gnu.org/licenses/",
+  "https://www.gnu.org/licenses/agpl-3.0.html",
+  "https://www.makeareadme.com/",
+]
 
 # Timeout for requests (seconds)
 timeout = 10
@@ -23,4 +33,4 @@ cache = true
 max_cache_age = "7d"
 
 # Accept status codes: 100-103 (informational), 200-299 (success), 429 (rate limit), 503 (unavailable) as non-blocking
-accept = ["100..=103", "200..=299", "429", "503"]
+accept = ["100..=103", "200..=299", "429", "503", "521", "522", "524"]