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jonbrenasjonbrenas
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Updated the tests
1 parent ad9a0c9 commit 00b4e8e

21 files changed

+43
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lines changed

‎tests/anoph/test_aim_data.py‎

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@@ -14,6 +14,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesAimData(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,

‎tests/anoph/test_base.py‎

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@@ -13,6 +13,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesBase(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -24,6 +25,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesBase(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_cnv_data.py‎

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@@ -18,6 +18,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesCnvData(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -45,6 +46,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesCnvData(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_cnv_frq.py‎

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@@ -24,6 +24,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesCnvFrequencyAnalysis(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -48,6 +49,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesCnvFrequencyAnalysis(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_dipclust.py‎

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@@ -19,6 +19,7 @@ def random_transcripts_contig(*, api, contig, n):
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesDipClustAnalysis(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -45,6 +46,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesDipClustAnalysis(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_distance.py‎

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@@ -15,6 +15,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesDistanceAnalysis(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -41,6 +42,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesDistanceAnalysis(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_fst.py‎

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@@ -16,6 +16,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesFstAnalysis(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -42,6 +43,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesFstAnalysis(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_g123.py‎

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@@ -13,6 +13,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesG123Analysis(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -40,6 +41,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesG123Analysis(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

‎tests/anoph/test_genome_features.py‎

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@@ -15,6 +15,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesGenomeFeaturesData(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -30,6 +31,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesGenomeFeaturesData(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,
@@ -173,6 +175,7 @@ def test_plot_transcript(fixture, api: AnophelesGenomeFeaturesData):
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def gh334_api(fixture_dir):
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return AnophelesGenomeFeaturesData(
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url=(fixture_dir / "gh334").as_uri(),
178+
public_url=(fixture_dir / "gh334").as_uri(),
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config_path="config.json",
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major_version_number=1,
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major_version_path="v1.0",

‎tests/anoph/test_genome_sequence.py‎

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@@ -15,6 +15,7 @@
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def ag3_sim_api(ag3_sim_fixture):
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return AnophelesGenomeSequenceData(
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url=ag3_sim_fixture.url,
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public_url=ag3_sim_fixture.url,
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config_path=_ag3.CONFIG_PATH,
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major_version_number=_ag3.MAJOR_VERSION_NUMBER,
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major_version_path=_ag3.MAJOR_VERSION_PATH,
@@ -27,6 +28,7 @@ def ag3_sim_api(ag3_sim_fixture):
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def af1_sim_api(af1_sim_fixture):
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return AnophelesGenomeSequenceData(
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url=af1_sim_fixture.url,
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public_url=af1_sim_fixture.url,
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config_path=_af1.CONFIG_PATH,
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major_version_number=_af1.MAJOR_VERSION_NUMBER,
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major_version_path=_af1.MAJOR_VERSION_PATH,

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