Merge branch 'malariagen:master' into fix-numpy-random-tests-756-clean

Author: mohamed-laarej

docs/source/_static/switcher.json

@@ -2,81 +2,81 @@
     {
         "name": "15.0.1",
         "version": "v15.0.1",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v15.0.1/",
+        "url": "https://malariagen.github.io/malariagen-data-python/v15.0.1/",
         "preferred": true
     },
     {
         "name": "14.0.0",
         "version": "v14.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v14.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v14.0.0/"
     },
     {
         "name": "13.5.0",
         "version": "v13.5.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.5.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.5.0/"
     },
     {
         "name": "13.4.0",
         "version": "v13.4.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.4.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.4.0/"
     },
     {
         "name": "13.3.0",
         "version": "v13.3.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.3.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.3.0/"
     },
     {
         "name": "13.2.1",
         "version": "v13.2.1",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.2.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.2.0/"
     },
     {
         "name": "13.1.0",
         "version": "v13.1.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.1.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.1.0/"
     },
     {
         "name": "13.0.4",
         "version": "v13.0.4",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v13.0.4/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v13.0.4/"
     },
     {
         "name": "12.0.0",
         "version": "v12.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v12.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v12.0.0/"
     },
     {
         "name": "11.0.0",
         "version": "v11.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v11.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v11.0.0/"
     },
     {
         "name": "10.0.0",
         "version": "v10.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v10.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v10.0.0/"
     },
     {
         "name": "9.0.0",
         "version": "v9.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v9.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v9.0.0/"
     },
     {
         "name": "8.0.0",
         "version": "v8.0.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v8.0.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v8.0.0/"
     },
     {
         "name": "7.15.0",
         "version": "v7.15.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v7.15.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v7.15.0/"
     },
     {
         "name": "7.14.0",
         "version": "v7.14.0",
-        "url": "https:///malariagen.github.io/malariagen-data-python/v7.14.0/"
+        "url": "https://malariagen.github.io/malariagen-data-python/v7.14.0/"
     },
     {
         "version": "dev",
-        "url": "https:///malariagen.github.io/malariagen-data-python/latest/"
+        "url": "https://malariagen.github.io/malariagen-data-python/latest/"
     }
 ]

malariagen_data/anoph/dipclust.py

@@ -44,7 +44,11 @@ def __init__(
 
     @check_types
     @doc(
-        summary="Hierarchically cluster diplotypes in region and produce an interactive plot.",
+        summary=""""
+        Hierarchically cluster diplotypes in region and produce an interactive plot.
+
+        If you use this function in a publication, please cite the original manuscript: doi.org/10.1093/molbev/msae140
+        """,
     )
     def plot_diplotype_clustering(
         self,
@@ -591,7 +595,11 @@ def _insert_dipclust_snp_trace(
         return figures, subplot_heights
 
     @doc(
-        summary="Perform diplotype clustering, annotated with heterozygosity, gene copy number and amino acid variants.",
+        summary=""""
+        Perform diplotype clustering, annotated with heterozygosity, gene copy number and amino acid variants.
+
+        If you use this function in a publication, please cite the original manuscript: doi.org/10.1093/molbev/msae140
+        """,
         parameters=dict(
             heterozygosity="Plot heterozygosity track.",
             snp_transcript="Plot amino acid variants for these transcripts.",