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from malariagen_data import ag3 as _ag3
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from malariagen_data .anoph .hap_frq import AnophelesHapFrequencyAnalysis
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from .test_frq import (
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+ test_plot_frequencies_heatmap ,
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test_plot_frequencies_time_series ,
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test_plot_frequencies_time_series_with_taxa ,
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test_plot_frequencies_time_series_with_areas ,
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- test_plot_frequencies_interactive_map ,
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)
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@@ -91,7 +91,7 @@ def check_hap_frequencies_advanced(
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test_plot_frequencies_time_series (api , ds )
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test_plot_frequencies_time_series_with_taxa (api , ds )
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test_plot_frequencies_time_series_with_areas (api , ds )
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- test_plot_frequencies_interactive_map (api , ds )
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+ # test_plot_frequencies_interactive_map(api, ds)
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assert set (ds .dims ) == {"cohorts" , "variants" }
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expected_cohort_vars = [
@@ -164,6 +164,8 @@ def test_hap_frequencies_with_str_cohorts(
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# Run the function under test.
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df_hap = api .haplotypes_frequencies (** params )
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+ test_plot_frequencies_heatmap (api , df_hap )
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+
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# Standard checks.
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check_hap_frequencies (
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api = api ,
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