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tests/anoph/test_hap_frq.py

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@@ -9,10 +9,10 @@
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from malariagen_data import ag3 as _ag3
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from malariagen_data.anoph.hap_frq import AnophelesHapFrequencyAnalysis
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from .test_frq import (
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test_plot_frequencies_heatmap,
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test_plot_frequencies_time_series,
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test_plot_frequencies_time_series_with_taxa,
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test_plot_frequencies_time_series_with_areas,
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test_plot_frequencies_interactive_map,
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)
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@@ -91,7 +91,7 @@ def check_hap_frequencies_advanced(
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test_plot_frequencies_time_series(api, ds)
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test_plot_frequencies_time_series_with_taxa(api, ds)
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test_plot_frequencies_time_series_with_areas(api, ds)
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test_plot_frequencies_interactive_map(api, ds)
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# test_plot_frequencies_interactive_map(api, ds)
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assert set(ds.dims) == {"cohorts", "variants"}
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expected_cohort_vars = [
@@ -164,6 +164,8 @@ def test_hap_frequencies_with_str_cohorts(
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# Run the function under test.
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df_hap = api.haplotypes_frequencies(**params)
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test_plot_frequencies_heatmap(api, df_hap)
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# Standard checks.
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check_hap_frequencies(
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api=api,

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