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malariagen_data/anopheles.py

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@@ -17,12 +17,7 @@
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import xarray as xr
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from numpydoc_decorator import doc # type: ignore
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from malariagen_data.anoph.snp_frq import (
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AnophelesSnpFrequencyAnalysis,
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_add_frequency_ci,
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_build_cohorts_from_sample_grouping,
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_prep_samples_for_cohort_grouping,
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)
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from malariagen_data.anoph.snp_frq import AnophelesSnpFrequencyAnalysis
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from .anoph import (
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aim_params,
@@ -65,6 +60,9 @@
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region_str,
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simple_xarray_concat,
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pandas_apply,
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_add_frequency_ci,
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_build_cohorts_from_sample_grouping,
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_prep_samples_for_cohort_grouping,
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)
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DEFAULT_MAX_COVERAGE_VARIANCE = 0.2

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