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Update SSSOM Extended Prefix Map
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‎src/sssom/obo.epm.json

Lines changed: 113 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -262,6 +262,21 @@
262262
"https://www.ebi.ac.uk/ols/ontologies/bco/terms?iri=http://purl.obolibrary.org/obo/BCO_"
263263
]
264264
},
265+
{
266+
"pattern": "^\\d{7}$",
267+
"prefix": "BERVO",
268+
"prefix_synonyms": [
269+
"bervo"
270+
],
271+
"uri_prefix": "https://w3id.org/bervo/BERVO_",
272+
"uri_prefix_synonyms": [
273+
"http://bioregistry.io/BERVO:",
274+
"http://bioregistry.io/bervo:",
275+
"http://w3id.org/bervo/BERVO_",
276+
"https://bioregistry.io/BERVO:",
277+
"https://bioregistry.io/bervo:"
278+
]
279+
},
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{
266281
"pattern": "^\\d{7}$",
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"prefix": "BFO",
@@ -1667,7 +1682,7 @@
16671682
"kegg.enzyme",
16681683
"sabiork.ec"
16691684
],
1670-
"uri_prefix": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=",
1685+
"uri_prefix": "https://www.enzyme-database.org/query.php?ec=",
16711686
"uri_prefix_synonyms": [
16721687
"http://bio2rdf.org/brenda:",
16731688
"http://bio2rdf.org/intenz:",
@@ -1697,6 +1712,7 @@
16971712
"http://sabiork.h-its.org/newSearch?q=ecnumber:",
16981713
"http://www.brenda-enzymes.info/enzyme.php?ecno=",
16991714
"http://www.brenda-enzymes.org/php/result_flat.php4?ecno=",
1715+
"http://www.ebi.ac.uk/enzymeportal/ec/",
17001716
"http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=",
17011717
"http://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=",
17021718
"http://www.enzyme-database.org/query.php?ec=",
@@ -1729,8 +1745,9 @@
17291745
"https://sabiork.h-its.org/newSearch?q=ecnumber:",
17301746
"https://www.brenda-enzymes.info/enzyme.php?ecno=",
17311747
"https://www.brenda-enzymes.org/php/result_flat.php4?ecno=",
1748+
"https://www.ebi.ac.uk/enzymeportal/ec/",
1749+
"https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=",
17321750
"https://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=",
1733-
"https://www.enzyme-database.org/query.php?ec=",
17341751
"https://www.genome.jp/dbget-bin/www_bget?ec:"
17351752
]
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},
@@ -2178,6 +2195,20 @@
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"https://www.evocontology.org/site/Main/BrowseEvoc?x_termid="
21792196
]
21802197
},
2198+
{
2199+
"prefix": "EXMO",
2200+
"prefix_synonyms": [
2201+
"exmo"
2202+
],
2203+
"uri_prefix": "http://purl.obolibrary.org/obo/EXMO_",
2204+
"uri_prefix_synonyms": [
2205+
"http://bioregistry.io/EXMO:",
2206+
"http://bioregistry.io/exmo:",
2207+
"https://bioregistry.io/EXMO:",
2208+
"https://bioregistry.io/exmo:",
2209+
"https://purl.obolibrary.org/obo/EXMO_"
2210+
]
2211+
},
21812212
{
21822213
"pattern": "^\\d{7}$",
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"prefix": "ExO",
@@ -7992,14 +8023,12 @@
79928023
"http://identifiers.org/atcc/",
79938024
"http://identifiers.org/atcc:",
79948025
"http://n2t.net/atcc:",
7995-
"http://www.atcc.org/Products/",
79968026
"http://www.atcc.org/products/",
79978027
"https://bioregistry.io/ATCC:",
79988028
"https://bioregistry.io/atcc:",
79998029
"https://identifiers.org/atcc/",
80008030
"https://identifiers.org/atcc:",
8001-
"https://n2t.net/atcc:",
8002-
"https://www.atcc.org/Products/"
8031+
"https://n2t.net/atcc:"
80038032
]
80048033
},
80058034
{
@@ -9121,6 +9150,15 @@
91219150
"https://bioregistry.io/bmrb.restraint:"
91229151
]
91239152
},
9153+
{
9154+
"prefix": "bodc.unit",
9155+
"uri_prefix": "http://vocab.nerc.ac.uk/collection/P06/current/",
9156+
"uri_prefix_synonyms": [
9157+
"http://bioregistry.io/bodc.unit:",
9158+
"https://bioregistry.io/bodc.unit:",
9159+
"https://vocab.nerc.ac.uk/collection/P06/current/"
9160+
]
9161+
},
91249162
{
91259163
"pattern": "^\\d+$",
91269164
"prefix": "bold.taxonomy",
@@ -9482,6 +9520,15 @@
94829520
"https://bioregistry.io/cc:"
94839521
]
94849522
},
9523+
{
9524+
"prefix": "cc.legacy",
9525+
"uri_prefix": "http://web.resource.org/cc/",
9526+
"uri_prefix_synonyms": [
9527+
"http://bioregistry.io/cc.legacy:",
9528+
"https://bioregistry.io/cc.legacy:",
9529+
"https://web.resource.org/cc/"
9530+
]
9531+
},
94859532
{
94869533
"pattern": "^\\d{6,7}$",
94879534
"prefix": "ccdc",
@@ -12017,6 +12064,15 @@
1201712064
"https://n2t.net/did:"
1201812065
]
1201912066
},
12067+
{
12068+
"prefix": "digitrubber",
12069+
"uri_prefix": "https://www.tib.eu/digitrubber#DIGITRUBBER_",
12070+
"uri_prefix_synonyms": [
12071+
"http://bioregistry.io/digitrubber:",
12072+
"http://www.tib.eu/digitrubber#DIGITRUBBER_",
12073+
"https://bioregistry.io/digitrubber:"
12074+
]
12075+
},
1202012076
{
1202112077
"pattern": "^DIP(\\:)?\\-\\d{1,}[ENXS]$",
1202212078
"prefix": "dip",
@@ -12039,10 +12095,10 @@
1203912095
},
1204012096
{
1204112097
"prefix": "discoverx",
12042-
"uri_prefix": "https://www.discoverx.com/catalogmanagement/catalog/?searchText=",
12098+
"uri_prefix": "https://emea.discoverx.com/catalog/",
1204312099
"uri_prefix_synonyms": [
1204412100
"http://bioregistry.io/discoverx:",
12045-
"http://www.discoverx.com/catalogmanagement/catalog/?searchText=",
12101+
"http://emea.discoverx.com/catalog/",
1204612102
"https://bioregistry.io/discoverx:"
1204712103
]
1204812104
},
@@ -12349,6 +12405,16 @@
1234912405
"https://n2t.net/dragondb.protein:"
1235012406
]
1235112407
},
12408+
{
12409+
"pattern": "^\\d{7}$",
12410+
"prefix": "drao",
12411+
"uri_prefix": "http://www.fairsharing.org/ontology/domain/DRAO_",
12412+
"uri_prefix_synonyms": [
12413+
"http://bioregistry.io/drao:",
12414+
"https://bioregistry.io/drao:",
12415+
"https://www.fairsharing.org/ontology/domain/DRAO_"
12416+
]
12417+
},
1235212418
{
1235312419
"prefix": "drc.filenumber",
1235412420
"uri_prefix": "https://www.nwo.nl/en/projects/",
@@ -17129,6 +17195,16 @@
1712917195
"https://purl.jp/bio/4/id/"
1713017196
]
1713117197
},
17198+
{
17199+
"pattern": "^\\d{7}$",
17200+
"prefix": "ioio",
17201+
"uri_prefix": "http://purl.obolibrary.org/obo/IOIO_",
17202+
"uri_prefix_synonyms": [
17203+
"http://bioregistry.io/ioio:",
17204+
"https://bioregistry.io/ioio:",
17205+
"https://purl.obolibrary.org/obo/IOIO_"
17206+
]
17207+
},
1713217208
{
1713317209
"pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$",
1713417210
"prefix": "ird.segment",
@@ -17973,6 +18049,15 @@
1797318049
"https://www.knapsackfamily.com/knapsack_core/information.php?word="
1797418050
]
1797518051
},
18052+
{
18053+
"prefix": "kyinno",
18054+
"uri_prefix": "https://www.kyinno.com/?s=",
18055+
"uri_prefix_synonyms": [
18056+
"http://bioregistry.io/kyinno:",
18057+
"http://www.kyinno.com/?s=",
18058+
"https://bioregistry.io/kyinno:"
18059+
]
18060+
},
1797618061
{
1797718062
"pattern": "^B\\d+$",
1797818063
"prefix": "langual",
@@ -20731,6 +20816,16 @@
2073120816
"https://bioregistry.io/nfdi.core:"
2073220817
]
2073320818
},
20819+
{
20820+
"pattern": "^\\d{7}$",
20821+
"prefix": "nfdi4culture.cto",
20822+
"uri_prefix": "https://nfdi4culture.de/ontology/CTO_",
20823+
"uri_prefix_synonyms": [
20824+
"http://bioregistry.io/nfdi4culture.cto:",
20825+
"http://nfdi4culture.de/ontology/CTO_",
20826+
"https://bioregistry.io/nfdi4culture.cto:"
20827+
]
20828+
},
2073420829
{
2073520830
"prefix": "nfdi4culture.id",
2073620831
"uri_prefix": "https://nfdi4culture.de/id/",
@@ -21400,6 +21495,15 @@
2140021495
"https://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#"
2140121496
]
2140221497
},
21498+
{
21499+
"prefix": "oboe.standard",
21500+
"uri_prefix": "http://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl",
21501+
"uri_prefix_synonyms": [
21502+
"http://bioregistry.io/oboe.standard:",
21503+
"https://bioregistry.io/oboe.standard:",
21504+
"https://ecoinformatics.org/oboe/oboe.1.2/oboe-standards.owl"
21505+
]
21506+
},
2140321507
{
2140421508
"pattern": "^AC[0-9]{8}$",
2140521509
"prefix": "obv",
@@ -26675,10 +26779,10 @@
2667526779
{
2667626780
"pattern": "^\\d+$",
2667726781
"prefix": "tngb",
26678-
"uri_prefix": "http://biobanknetwork.telethon.it/Sample/View?sampleId=",
26782+
"uri_prefix": "https://biobanknetwork.telethon.it/Sample/View?sampleId=",
2667926783
"uri_prefix_synonyms": [
26784+
"http://biobanknetwork.telethon.it/Sample/View?sampleId=",
2668026785
"http://bioregistry.io/tngb:",
26681-
"https://biobanknetwork.telethon.it/Sample/View?sampleId=",
2668226786
"https://bioregistry.io/tngb:"
2668326787
]
2668426788
},

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