diff --git a/poetry.lock b/poetry.lock
index 4b1f010f..92fe99a8 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,30 +1,27 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
[[package]]
name = "alabaster"
-version = "0.7.13"
-description = "A configurable sidebar-enabled Sphinx theme"
+version = "0.7.16"
+description = "A light, configurable Sphinx theme"
optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.9"
files = [
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[[package]]
name = "annotated-types"
-version = "0.6.0"
+version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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-
[[package]]
name = "attrs"
version = "23.2.0"
@@ -46,18 +43,15 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p
[[package]]
name = "babel"
-version = "2.14.0"
+version = "2.15.0"
description = "Internationalization utilities"
optional = false
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+python-versions = ">=3.8"
files = [
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-pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
-
[package.extras]
dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
@@ -74,13 +68,13 @@ files = [
[[package]]
name = "certifi"
-version = "2024.2.2"
+version = "2024.6.2"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
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@@ -311,18 +305,18 @@ test = ["pytest (>=6)"]
[[package]]
name = "filelock"
-version = "3.14.0"
+version = "3.15.1"
description = "A platform independent file lock."
optional = false
python-versions = ">=3.8"
files = [
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+testing = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "diff-cover (>=8.0.1)", "pytest (>=7.4.3)", "pytest-asyncio (>=0.21)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-timeout (>=2.2)"]
typing = ["typing-extensions (>=4.8)"]
[[package]]
@@ -493,13 +487,13 @@ six = "*"
[[package]]
name = "jinja2"
-version = "3.1.3"
+version = "3.1.4"
description = "A very fast and expressive template engine."
optional = false
python-versions = ">=3.7"
files = [
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@@ -539,20 +533,18 @@ hbreader = "*"
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name = "jsonschema"
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+version = "4.22.0"
description = "An implementation of JSON Schema validation for Python"
optional = false
python-versions = ">=3.8"
files = [
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jsonschema-specifications = ">=2023.03.6"
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referencing = ">=0.28.4"
rpds-py = ">=0.7.1"
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referencing = ">=0.31.0"
[[package]]
name = "linkml-runtime"
-version = "1.7.5"
+version = "1.7.7"
description = "Runtime environment for LinkML, the Linked open data modeling language"
optional = false
python-versions = "<4.0,>=3.8"
files = [
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@@ -696,13 +687,13 @@ files = [
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name = "mdit-py-plugins"
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+version = "0.4.1"
description = "Collection of plugins for markdown-it-py"
optional = false
python-versions = ">=3.8"
files = [
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[[package]]
name = "networkx"
-version = "3.1"
+version = "3.2.1"
description = "Python package for creating and manipulating graphs and networks"
optional = false
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+python-versions = ">=3.9"
files = [
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files = [
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- {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
+ {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+ {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
]
[[package]]
@@ -1892,24 +1918,24 @@ zstd = ["zstandard (>=0.18.0)"]
[[package]]
name = "validators"
-version = "0.28.1"
+version = "0.28.3"
description = "Python Data Validation for Humansâ„¢"
optional = false
python-versions = ">=3.8"
files = [
- {file = "validators-0.28.1-py3-none-any.whl", hash = "sha256:890c98789ad884037f059af6ea915ec2d667129d509180c2c590b8009a4c4219"},
- {file = "validators-0.28.1.tar.gz", hash = "sha256:5ac88e7916c3405f0ce38ac2ac82a477fcf4d90dbbeddd04c8193171fc17f7dc"},
+ {file = "validators-0.28.3-py3-none-any.whl", hash = "sha256:53cafa854f13850156259d9cc479b864ee901f6a96e6b109e6fc33f98f37d99f"},
+ {file = "validators-0.28.3.tar.gz", hash = "sha256:c6c79840bcde9ba77b19f6218f7738188115e27830cbaff43264bc4ed24c429d"},
]
[[package]]
name = "virtualenv"
-version = "20.26.1"
+version = "20.26.2"
description = "Virtual Python Environment builder"
optional = false
python-versions = ">=3.7"
files = [
- {file = "virtualenv-20.26.1-py3-none-any.whl", hash = "sha256:7aa9982a728ae5892558bff6a2839c00b9ed145523ece2274fad6f414690ae75"},
- {file = "virtualenv-20.26.1.tar.gz", hash = "sha256:604bfdceaeece392802e6ae48e69cec49168b9c5f4a44e483963f9242eb0e78b"},
+ {file = "virtualenv-20.26.2-py3-none-any.whl", hash = "sha256:a624db5e94f01ad993d476b9ee5346fdf7b9de43ccaee0e0197012dc838a0e9b"},
+ {file = "virtualenv-20.26.2.tar.gz", hash = "sha256:82bf0f4eebbb78d36ddaee0283d43fe5736b53880b8a8cdcd37390a07ac3741c"},
]
[package.dependencies]
@@ -2002,20 +2028,20 @@ files = [
[[package]]
name = "zipp"
-version = "3.18.1"
+version = "3.19.2"
description = "Backport of pathlib-compatible object wrapper for zip files"
optional = false
python-versions = ">=3.8"
files = [
- {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
- {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
+ {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+ {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
]
[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
[metadata]
lock-version = "2.0"
-python-versions = "^3.8"
-content-hash = "c308daded19714684f04091b38dc509dd6da0431c0c47154113f29c60993b7c5"
+python-versions = "^3.9"
+content-hash = "0411b9c2770dbaf043efa38698df9bbe8323941e2d513721685bb37f6be5d1ab"
diff --git a/pyproject.toml b/pyproject.toml
index 75c318cd..d48ffa5b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,13 +11,13 @@ license = "MIT"
readme = "README.md"
[tool.poetry.dependencies]
-python = "^3.8"
+python = "^3.9"
click = ">=8.1.6"
curies = ">=0.7.3"
linkml-runtime = "^1.7.5"
pandas = ">1.0.3"
pansql = { version = ">=0.0.1", extras = ["pansql"] }
-sssom-schema = "^0.15.2"
+sssom-schema = { path = "../SSSOM" } # version "^0.15.2"
networkx = { version = ">=3.1", extras = ["networkx"] }
sparqlwrapper = ">=2.0.0"
validators = ">=0.20.0"
@@ -26,6 +26,7 @@ pyyaml = "^6.0.1"
rdflib = ">=6.0.0"
scipy = {version = "*", extras = ["scipy"]}
importlib-resources = "^6.1.1"
+tsvalid = ">=0.0.1"
[tool.poetry.group.dev.dependencies]
pytest = {version = ">=7.1.2"}
diff --git a/tests/test_utils.py b/tests/test_utils.py
index e8e518e9..59f8751c 100644
--- a/tests/test_utils.py
+++ b/tests/test_utils.py
@@ -358,6 +358,14 @@ def test_msdf_from_mappings(self):
self.assertEqual(rows[0], tuple(msdf.df.iloc[0]))
self.assertEqual(new_msdf.metadata, msdf.metadata)
+ def test_curie_map(self):
+ """Test getting dict from a SSSOM mapping object or a dictionary."""
+ from sssom_schema import MappingSet
+
+ mapping_obj = MappingSet(mapping_set_id="a", license="b")
+ self.assertTrue("license" in mapping_obj)
+ self.assertTrue("curie_map" in mapping_obj)
+
def test_get_dict_from_mapping(self):
"""Test getting dict from a SSSOM mapping object or a dictionary."""
mapping_obj = SSSOM_Mapping(
diff --git a/tests/validate_data/basic.tsv.json b/tests/validate_data/basic.tsv.json
index 6e0e8e07..3d63b5ea 100644
--- a/tests/validate_data/basic.tsv.json
+++ b/tests/validate_data/basic.tsv.json
@@ -1 +1,3527 @@
-[{"@id": "http://example.org/x/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/organ"}]}, {"@id": "http://example.org/z/bone_element", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_element"}, {"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/y/bone"}]}, {"@id": "http://example.org/z/eyeball", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/eyeball"}]}, {"@id": "http://example.org/z/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/eye"}, {"@id": "http://example.org/x/eye"}]}, {"@id": "http://example.org/x/foot", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/foot"}, {"@id": "http://example.org/y/foot"}]}, {"@id": "http://example.org/x/liver", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/liver"}, {"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/z/liver"}]}, {"@id": "http://example.org/y/bone", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/z/bone_tissue"}, {"@id": "http://example.org/x/bone_element"}, {"@id": "http://example.org/z/bone_element"}]}, {"@id": "http://example.org/x/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/eye"}, {"@id": "http://example.org/z/eye"}]}, {"@id": "_:N93142a4c6fdf4f9c968448f6252478a4", "@type": ["https://w3id.org/sssom/MappingSet"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/creator_id": [{"@id": "file:///Users/matentzn/ws/sssom-py/tests/cjm"}], "https://w3id.org/sssom/license": [{"@value": "https://creativecommons.org/publicdomain/zero/1.0/"}], "https://w3id.org/sssom/mapping_date": [{"@value": "2020-05-30"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "https://github.com/cmungall/rdf_matcher"}], "https://w3id.org/sssom/mappings": [{"@id": "_:N585c7d8772b74455ac4e87ac7d001000"}, {"@id": "_:N317fe36b6e894762be99af5a4e21b2fd"}, {"@id": "_:Nfd5ecb7bc4f946a0ba6fb96b00fec898"}, {"@id": "_:N84498557a13c4f8589c7a99fc9d5b12c"}, {"@id": "_:Na58b738204614ebb82976be303fe83fc"}, {"@id": "_:Ne9986ab4c900487a8e27ecb0522d359d"}, {"@id": "_:N8c796e7670844fc18a86696fcdb7760b"}, {"@id": "_:N753f2bcfd25c4d3aa08a58f452003543"}, {"@id": "_:N6a1f51ff5cfb42a1aa9cf319650ab5f8"}, {"@id": "_:N41c7bbae28e34b66b98e0b9a50ac994c"}, {"@id": "_:N4b7fc3da44c04a13a6c487679ee08925"}, {"@id": "_:N2540dd41de8841f7bb8794af5a967a96"}, {"@id": "_:Nb785d4703ffc43b38f442c84ec1064a8"}, {"@id": "_:Nefb45c800d144a179a2b0d155b1b4e0b"}, {"@id": "_:N131f8b0b11554a22a388fdc0edd713d6"}, {"@id": "_:N387b1d24b5cd4febab73f6aa9daf1c63"}, {"@id": "_:Na71d1e4dd1fe46f0b6a8074493c9f2a3"}, {"@id": "_:Ne325831260bc4559954296f469f4a60b"}, {"@id": "_:N41566fbb2fab4b319251d2d48c5f1123"}, {"@id": "_:N770b677737ea4e3ca690564cd988dd9b"}, {"@id": "_:N9266c64cef9743c980bd596dee6fd48d"}, {"@id": "_:N9e7e2a4add2549219f91b0ade9503b79"}, {"@id": "_:N14c4e9d6db9f4b559935f0f75315e981"}, {"@id": "_:Nef577d1b544142ad931b37e484d7662c"}, {"@id": "_:N91953e56c4cc482ab6ee2c5eb0f385de"}, {"@id": "_:N9edde0472c1648138f5d390d85966f64"}, {"@id": "_:N212272db43ec419b9149e8c63dab0e53"}, {"@id": "_:N768853d18bef4541ae3c9c700c9a63f1"}, {"@id": "_:N808445e1350f48a7ac47fee6882e9f28"}, {"@id": "_:N736e9e95032b4a469b356a9bee5010eb"}, {"@id": "_:N3cfa4d0e9f774d12a420a0512e73fe46"}, {"@id": "_:N93c6e8e9739947b1a6b20396ae07e34a"}, {"@id": "_:Nacb6c7527b3d40ee8801c3c42cc68040"}, {"@id": "_:N556885f92f364e6fac2ba5ee2cdde091"}, {"@id": "_:Nc2fe08fc454d45979357851e1d3c6084"}, {"@id": "_:N7d697dc26b2e4da3b4582e934b0ca107"}, {"@id": "_:N228ca2e10743441aa2fec96570a9c1c1"}, {"@id": "_:Nc71c67f9a75c47e19fe87ed682dcf6c7"}, {"@id": "_:N1270a5e9ab6f49f4a73a69701d7550e8"}, {"@id": "_:Ne97a6ec22cb84b63aa61f7261859bfdc"}, {"@id": "_:Nd5816651c59f455f8e97e442c6d8fece"}, {"@id": "_:Nfd0e2f7dba7841dc92ca40429bab6e87"}, {"@id": "_:N5ff8a881a68b4a3db25e79c539aa0c5a"}, {"@id": "_:N0808b064d38541d99d1553adbe3edff7"}, {"@id": "_:N4e8fa00f9f4647298a8123d4cf085484"}, {"@id": "_:N161fa8867e964553bed16693801afd1c"}, {"@id": "_:N481c4f2a68c640328e5db5a5423b4b41"}, {"@id": "_:N620f99671ab343e8bfbaf3c15ca478ff"}, {"@id": "_:N50ee11fc78a9461ab47d1ec73e3578f4"}, {"@id": "_:N49324895f8b6407688889f2eda557485"}, {"@id": "_:N1cd41ec1ac5644ea8c5478cef2c79203"}, {"@id": "_:Ncc2c27509ba44b46bd8073af6278d638"}, {"@id": "_:N3eb92436c1624e8c9fd791490788ca7b"}, {"@id": "_:N96e00de27e0a41c883f821cf25675ada"}, {"@id": "_:N3b723189b306472398364735d3006983"}, {"@id": "_:Ne7c68bda6c2b4364ad8fa7613fd7d644"}, {"@id": "_:N36b78a9ad9da4235ba13db0ea9d8ed92"}, {"@id": "_:N4b30fe13ef8b48358d4c595a81abcc54"}, {"@id": "_:Nf745afa1ec3546d3ac4615373d924eb8"}, {"@id": "_:N2bbb513b6d394f5d82ba20c8ac226a3f"}, {"@id": "_:N7382899a8ec74392abb77efc5d34125b"}, {"@id": "_:Nf01111f1e86e465bad832eadc7ee5dad"}, {"@id": "_:Nc125deaa11cd4a7e9fdb0129edf0e76e"}, {"@id": "_:Ndb866e2d47a64f0394ee7508ced5da52"}, {"@id": "_:N17a6ce323e814129a09e9af437e7752b"}, {"@id": "_:Nb3d2c928042d4ac384334906e67eb1e8"}, {"@id": "_:N1b3772be430f435681426ecc4c978b1a"}, {"@id": "_:N89e690e73ecd49c5a8d71cc45e137114"}, {"@id": "_:N739c6d3909834af384933e7f0fb61760"}, {"@id": "_:N22ab0b0e81f448799b07fe0ec3c23a93"}, {"@id": "_:N8af854dc09514ea68e0d1b1231b07764"}, {"@id": "_:Nae39186486c5461c9a8a6a0ae2c33b2e"}, {"@id": "_:N88f1da8280b342c1a17e3ce193458c68"}, {"@id": "_:N8d59bd119af04b06b6c08c6352e5f6d9"}, {"@id": "_:N427f2a04df8c43509f5e36ae2e9a9371"}, {"@id": "_:Nea68aa445f334dbab83557aba644edfa"}, {"@id": "_:N3d0e634ff236400f83c3e3d61fbce235"}, {"@id": "_:Nbc59290649724741a6be4aa0416c7a7c"}, {"@id": "_:N874f1024603c499580152d0e8c23e374"}, {"@id": "_:Nfba64b06586b45f1b65b7f280703527b"}, {"@id": "_:N82ff701884cd434daec1da109391e022"}, {"@id": "_:N37e671b1a25b482bacbeae2fef940dea"}, {"@id": "_:Nfb950a5878024568922aa3d72c6ffb86"}, {"@id": "_:Nd08c3bd0cfcb4fe5928823d54266cc28"}, {"@id": "_:N08805bcb35a14e93b34050e381dc818e"}, {"@id": "_:N112c1b9c86b2408ab9fe4c35a30515da"}, {"@id": "_:Nfcc1b298bab8484086c6cf0a59be32a5"}, {"@id": "_:N0c03b1ff02464d79a8be4f40cad785f9"}, {"@id": "_:N0df341f56d6a4769b732e85bbeca53f6"}, {"@id": "_:N0bbfa532efab400d94e2c5adf9e6ac0d"}, {"@id": "_:Nc156620357424b88b01c6f11ef0180e8"}, {"@id": "_:Ned89142bd4a94970bf7990f1630d11a3"}, {"@id": "_:N612ea4c01f24499f8e5348e0c6a2ceb0"}, {"@id": "_:N703b0245307c4e7e965bd4bd9ff4a879"}, {"@id": "_:N32323d0ba04f406b9dfa98ef42274a52"}, {"@id": "_:N3776d63c407d45b68dd923a77c8815d7"}, {"@id": "_:Na75fec1fd8cb48e58a90ad33e625f579"}, {"@id": "_:Nc39f918d717e4a67943a8fd4fd8887e1"}, {"@id": "_:N3260f6f3a2654b11ad97e0c00fb77a8d"}, {"@id": "_:N6bb9fb88bd684e1d97fbd9ea56f4a159"}, {"@id": "_:N3f870fc7fc134d4ca20884d24ee17253"}, {"@id": 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{"@id": "_:N966dc9265b4b4e698fb0fde563e4c467"}, {"@id": "_:N08039523f0994763bb59448947b6e096"}, {"@id": "_:Nf7b0c844d96c485e876a6a392b30fa1d"}, {"@id": "_:N0e92d38d386448358a9457a0754efda2"}, {"@id": "_:N1a98e80f2c4a4b44b4b0fc8366cafa44"}, {"@id": "_:N9b6117633bde48dc89197b9ace6fe7be"}, {"@id": "_:Ne1822636fd124a6aa23ec5f8fe21618f"}, {"@id": "_:N8c79f9f8d9c240ffbb30af96b11042dd"}, {"@id": "_:N1c338ee4be6d48288777fa905996160f"}, {"@id": "_:N07ce47a333ca43a0b1fbe79201aba3f1"}, {"@id": "_:N6196e926edc049519797ffd327603285"}, {"@id": "_:N8ef2f9cd853647feb4f828c6c7c55347"}, {"@id": "_:N283f08986e874b20be1696cf09bec06f"}, {"@id": "_:Nd2a99a74d02c4d0bbe2e1978385324a6"}], "https://w3id.org/sssom/object_match_field": [{"@id": "http://www.w3.org/2000/01/rdf-schema#label"}], "https://w3id.org/sssom/object_source": [{"@value": "y"}], "https://w3id.org/sssom/subject_match_field": [{"@id": "http://www.w3.org/2000/01/rdf-schema#label"}], "https://w3id.org/sssom/subject_source": [{"@value": "z"}]}, 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"https://w3id.org/sssom/object_source": [{"@value": "y"}], "https://w3id.org/sssom/subject_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/subject_label": [{"@value": "manus"}], "https://w3id.org/sssom/subject_match_field": [{"@id": "oio:hasExactSynonym"}], "https://w3id.org/sssom/subject_source": [{"@value": "x"}], "http://www.w3.org/2002/07/owl#annotatedProperty": [{"@id": "http://www.w3.org/2002/07/owl#equivalentClass"}], "http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/x/hand"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/y/hand"}]}, {"@id": "_:N955c008b813642a789a5e0338782028c", "@type": ["http://www.w3.org/2002/07/owl#Axiom"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/confidence": [{"@type": "xsd:double", "@value": "0.7387961250362586"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "rdf_matcher"}], "https://w3id.org/sssom/match_string": 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"https://w3id.org/sssom/object_match_field": [{"@id": "http://www.w3.org/2000/01/rdf-schema#label"}], "https://w3id.org/sssom/object_source": [{"@value": "z"}], "https://w3id.org/sssom/subject_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/subject_label": [{"@value": "tissue"}], "https://w3id.org/sssom/subject_match_field": [{"@id": "http://www.w3.org/2000/01/rdf-schema#label"}], "https://w3id.org/sssom/subject_source": [{"@value": "x"}], "http://www.w3.org/2002/07/owl#annotatedProperty": [{"@id": "http://www.w3.org/2002/07/owl#equivalentClass"}], "http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/x/tissue"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/z/tissue"}]}, {"@id": "_:Nd649d922b6c14a49bbcb1a60b8639b20", "@type": ["http://www.w3.org/2002/07/owl#Axiom"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/confidence": [{"@type": "xsd:double", "@value": 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"http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/z/organ"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/x/organ"}]}, {"@id": "_:N12ff979f595441e5bed6e7c2e15a9c0c", "@type": ["http://www.w3.org/2002/07/owl#Axiom"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/confidence": [{"@type": "xsd:double", "@value": "0.7387961250362586"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "rdf_matcher"}], "https://w3id.org/sssom/match_string": [{"@value": "UBERON:0002387"}], "https://w3id.org/sssom/mapping_justification": [{"@value": "semapv:LexicalMatching"}], "https://w3id.org/sssom/object_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/object_label": [{"@value": "feet"}], "https://w3id.org/sssom/object_match_field": [{"@id": "oio:hasDbXref"}], "https://w3id.org/sssom/object_source": [{"@value": "y"}], "https://w3id.org/sssom/subject_category": [{"@value": 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"http://example.org/x/lung"}, {"@id": "http://example.org/z/lung"}]}, {"@id": "http://example.org/x/hand", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/hand"}, {"@id": "http://example.org/y/hand"}]}, {"@id": "http://example.org/z/lung", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/lung"}, {"@id": "http://example.org/x/lung"}]}, {"@id": "http://example.org/z/bone_tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/y/bone"}, {"@id": "http://example.org/x/bone_element"}]}, {"@id": "http://example.org/x/bone_tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/bone_element"}, {"@id": "http://example.org/z/bone_tissue"}, {"@id": "http://example.org/y/bone"}]}, {"@id": "http://example.org/y/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/eye"}, {"@id": "http://example.org/x/eye"}]}, {"@id": "http://example.org/x/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/region"}, {"@id": "http://example.org/z/region"}]}, {"@id": "http://example.org/y/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/x/organ"}]}, {"@id": "http://example.org/x/eyeball", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/eyeball"}]}, {"@id": "http://example.org/y/heart", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/heart"}, {"@id": "http://example.org/z/heart"}]}, {"@id": "http://example.org/y/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/region"}, {"@id": "http://example.org/z/region"}]}, {"@id": "http://example.org/z/hindlimb", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/hindlimb"}]}, {"@id": "http://example.org/x/heart", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/heart"}, {"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/heart"}]}, {"@id": "http://example.org/z/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/region"}, {"@id": "http://example.org/x/region"}]}, {"@id": "http://example.org/z/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/lung"}, {"@id": "http://example.org/x/liver"}, {"@id": "http://example.org/y/organ"}, {"@id": "http://example.org/x/organ"}, {"@id": "http://example.org/x/heart"}]}, {"@id": "http://example.org/z/tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/tissue"}, {"@id": "http://example.org/y/tissue"}]}, {"@id": "http://example.org/y/appendage", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/appendage"}, {"@id": "http://example.org/x/appendage"}]}, {"@id": "http://example.org/y/hand", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/hand"}, {"@id": "http://example.org/z/hand"}]}, {"@id": "http://example.org/x/lung", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/lung"}, {"@id": "http://example.org/z/lung"}]}, {"@id": "http://example.org/y/tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/tissue"}, {"@id": "http://example.org/x/tissue"}]}]
+{
+ "mapping_set_id": "https://w3id.org/sssom/mapping/tests/data/basic.tsv",
+ "license": "https://creativecommons.org/publicdomain/zero/1.0/",
+ "mappings": [
+ {
+ "subject_id": "a:something",
+ "predicate_id": "rdfs:subClassOf",
+ "object_id": "b:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "XXXXX",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "xxxxxx",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "a:example",
+ "object_source": "b:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.8,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "a:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "c:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "XYXYX",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "xyxyxy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "a:example",
+ "object_source": "c:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.83,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "c:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "b:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YXYXY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "yxyxyx",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "c:example",
+ "object_source": "b:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.84,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "c:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "d:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YYYYY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "yyyyyy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "c:example",
+ "object_source": "d:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.81,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "d:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "a:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YYYYY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "predicate_modifier": "Not",
+ "object_label": "yyyyyy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "d:example",
+ "object_source": "a:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.82,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:appendage",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "appendages",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label",
+ "skos:prefLabel"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendag"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:appendage",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "APPENDAGE",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendage"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:appendage",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "APPENDAGE",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendag"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0001474"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.764651037,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasRelatedSynonym"
+ ],
+ "match_string": [
+ "bone element"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.534601961,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.696730455,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasRelatedSynonym"
+ ],
+ "match_string": [
+ "bone el"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.2,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.261203875,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0001474"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.2,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.261203875,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.534601961,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.261203875,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.2,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.261203875,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone tissue",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002481"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:eye",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:eye",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "eye",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "eyes",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.568874072,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "ey"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:eye",
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+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:hand",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "manus",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.8,
+ "subject_match_field": [
+ "oboInOwl:hasExactSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasExactSynonym"
+ ],
+ "match_string": [
+ "hand"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:hand",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:hand",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "hands",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002398"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:hand",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:hand",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "hands",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.821262391,
+ "subject_match_field": [
+ "oboInOwl:hasExactSynonym"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "hand"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:heart",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:heart",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "heart",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0000948"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:heart",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:heart",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "hearts",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0000948"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:hindlimb",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:hindlimb",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "hindlimb",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "hindlimb",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "hindlimb"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:hindlimb",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:hindlimb",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "hindlimb",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "hindlimb",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "hindlimb"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:liver",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:liver",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "liver",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002107"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:liver",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:liver",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "livers",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002107"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:lung",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:lung",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "lung",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002048"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:lung",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:lung",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "lungs",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0002048"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:heart",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "heart",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "BAD:ORGAN"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:liver",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "liver",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "BAD:ORGAN"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:lung",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "lung",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "BAD:ORGAN"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:organ",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "organ",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "organ"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:organ",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "organ",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "organ"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:organ",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:organ",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "ORGAN",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "organs",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "organ"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:region",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:region",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "REGION",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "region",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "region"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:region",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:region",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "REGION",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "region",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "region"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:region",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:region",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "REGION",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "regions",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "region"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "TISSUE",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "tissue",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "tissue"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "x:tissue",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "TISSUE",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "tissue",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "x:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "tissu"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "z:tissue",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:tissue",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "TISSUE",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "tissues",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "z:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "tissu"
+ ],
+ "comment": "."
+ }
+ ],
+ "creator_id": [
+ "orcid:1234",
+ "orcid:5678"
+ ],
+ "mapping_tool": "https://github.com/cmungall/rdf_matcher",
+ "mapping_date": "2020-05-30",
+ "@type": "MappingSet",
+ "@context": {
+ "dcterms": "http://purl.org/dc/terms/",
+ "linkml": "https://w3id.org/linkml/",
+ "oboInOwl": "http://www.geneontology.org/formats/oboInOwl#",
+ "owl": "http://www.w3.org/2002/07/owl#",
+ "pav": "http://purl.org/pav/",
+ "prov": "http://www.w3.org/ns/prov#",
+ "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+ "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+ "semapv": "https://w3id.org/semapv/vocab/",
+ "skos": "http://www.w3.org/2004/02/skos/core#",
+ "sssom": "https://w3id.org/sssom/",
+ "@vocab": "https://w3id.org/sssom/",
+ "author_id": {
+ "@type": "rdfs:Resource",
+ "@id": "pav:authoredBy"
+ },
+ "comment": {
+ "@id": "rdfs:comment"
+ },
+ "confidence": {
+ "@type": "xsd:double"
+ },
+ "creator_id": {
+ "@type": "rdfs:Resource",
+ "@id": "dcterms:creator"
+ },
+ "curation_rule": {
+ "@type": "rdfs:Resource"
+ },
+ "documentation": {
+ "@type": "@id"
+ },
+ "homepage": {
+ "@type": "@id"
+ },
+ "imports": {
+ "@type": "@id"
+ },
+ "issue_tracker": {
+ "@type": "@id"
+ },
+ "issue_tracker_item": {
+ "@type": "rdfs:Resource"
+ },
+ "last_updated": {
+ "@type": "xsd:date"
+ },
+ "license": {
+ "@type": "@id",
+ "@id": "dcterms:license"
+ },
+ "mapping_cardinality": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "mapping_date": {
+ "@type": "xsd:date",
+ "@id": "pav:authoredOn"
+ },
+ "mapping_justification": {
+ "@type": "rdfs:Resource"
+ },
+ "mapping_provider": {
+ "@type": "@id"
+ },
+ "mapping_registry_id": {
+ "@type": "rdfs:Resource"
+ },
+ "mapping_set_description": {
+ "@id": "dcterms:description"
+ },
+ "mapping_set_id": {
+ "@type": "@id"
+ },
+ "mapping_set_references": {
+ "@type": "@id"
+ },
+ "mapping_set_source": {
+ "@type": "@id",
+ "@id": "prov:wasDerivedFrom"
+ },
+ "mapping_set_title": {
+ "@id": "dcterms:title"
+ },
+ "mapping_set_version": {
+ "@id": "owl:versionInfo"
+ },
+ "mapping_source": {
+ "@type": "rdfs:Resource"
+ },
+ "mappings": {
+ "@type": "@id"
+ },
+ "mirror_from": {
+ "@type": "@id"
+ },
+ "object_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedTarget"
+ },
+ "object_match_field": {
+ "@type": "rdfs:Resource"
+ },
+ "object_preprocessing": {
+ "@type": "rdfs:Resource"
+ },
+ "object_source": {
+ "@type": "rdfs:Resource"
+ },
+ "object_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "predicate_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedProperty"
+ },
+ "predicate_modifier": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "predicate_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "publication_date": {
+ "@type": "xsd:date",
+ "@id": "dcterms:created"
+ },
+ "registry_confidence": {
+ "@type": "xsd:double"
+ },
+ "reviewer_id": {
+ "@type": "rdfs:Resource"
+ },
+ "see_also": {
+ "@id": "rdfs:seeAlso"
+ },
+ "semantic_similarity_score": {
+ "@type": "xsd:double"
+ },
+ "subject_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedSource"
+ },
+ "subject_match_field": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_preprocessing": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_source": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "Mapping": {
+ "@id": "owl:Axiom"
+ },
+ "a": "http://example.org/a/",
+ "b": "http://example.org/b/",
+ "c": "http://example.org/c/",
+ "d": "http://example.org/d/",
+ "orcid": "https://orcid.org/",
+ "x": "http://example.org/x/",
+ "y": "http://example.org/y/",
+ "z": "http://example.org/z/"
+ }
+}
\ No newline at end of file
diff --git a/tests/validate_data/basic.tsv.rdf b/tests/validate_data/basic.tsv.rdf
index befa5cc3..dd206c0e 100644
--- a/tests/validate_data/basic.tsv.rdf
+++ b/tests/validate_data/basic.tsv.rdf
@@ -1,2455 +1,2363 @@
-@prefix : .
+@prefix a: .
+@prefix b: .
+@prefix c: .
+@prefix d: .
+@prefix dc1: .
+@prefix oboInOwl: .
+@prefix orcid: .
@prefix owl: .
+@prefix pav: .
@prefix rdfs: .
+@prefix semapv: .
+@prefix skos: .
@prefix sssom: .
@prefix x: .
+@prefix xsd: .
@prefix y: .
@prefix z: .
-x:eyeball owl:equivalentClass z:eyeball .
-
-z:eyeball owl:equivalentClass x:eyeball .
-
-x:hindlimb owl:equivalentClass z:hindlimb .
-
-z:hindlimb owl:equivalentClass x:hindlimb .
-
-y:appendage owl:equivalentClass x:appendage,
- z:appendage .
-
-y:foot owl:equivalentClass x:foot,
- z:foot .
-
-y:organ owl:equivalentClass x:organ,
- z:organ .
-
-y:region owl:equivalentClass x:region,
- z:region .
-
-y:tissue owl:equivalentClass x:tissue,
- z:tissue .
-
-z:eye owl:equivalentClass x:eye,
- y:eye .
-
-z:heart owl:equivalentClass x:heart,
- y:heart .
-
-z:liver owl:equivalentClass x:liver,
- y:liver .
-
-z:lung owl:equivalentClass x:lung,
- y:lung .
-
-x:appendage owl:equivalentClass y:appendage,
- z:appendage .
-
-x:eye owl:equivalentClass y:eye,
- z:eye .
-
-x:organ owl:equivalentClass y:organ,
- z:organ .
-
-x:region owl:equivalentClass y:region,
- z:region .
-
-x:tissue owl:equivalentClass y:tissue,
- z:tissue .
-
-y:eye owl:equivalentClass x:eye,
- z:eye .
-
-y:heart owl:equivalentClass x:heart,
- z:heart .
-
-y:liver owl:equivalentClass x:liver,
- z:liver .
-
-y:lung owl:equivalentClass x:lung,
- z:lung .
-
-z:appendage owl:equivalentClass x:appendage,
- y:appendage .
-
-z:region owl:equivalentClass x:region,
- y:region .
-
-z:tissue owl:equivalentClass x:tissue,
- y:tissue .
-
-x:foot owl:equivalentClass y:foot,
- z:foot .
-
-y:hand owl:equivalentClass x:hand,
- z:hand .
-
-z:foot owl:equivalentClass x:foot,
- y:foot .
-
-x:heart owl:equivalentClass y:heart,
- z:heart,
- z:organ .
-
-x:liver owl:equivalentClass y:liver,
- z:liver,
- z:organ .
-
-x:lung owl:equivalentClass y:lung,
- z:lung,
- z:organ .
-
-x:hand owl:equivalentClass y:hand,
- z:hand .
-
-z:hand owl:equivalentClass x:hand,
- y:hand .
-
-x:bone_tissue owl:equivalentClass y:bone,
- z:bone_element,
- z:bone_tissue .
-
-z:bone_tissue owl:equivalentClass x:bone_element,
- x:bone_tissue,
- y:bone .
-
-z:bone_element owl:equivalentClass x:bone_element,
- x:bone_tissue,
- y:bone .
-
-z:organ owl:equivalentClass x:heart,
- x:liver,
- x:lung,
- x:organ,
- y:organ .
-
-y:bone owl:equivalentClass x:bone_element,
- x:bone_tissue,
- z:bone_element,
- z:bone_tissue .
-
-x:bone_element owl:equivalentClass y:bone,
- z:bone_element,
- z:bone_tissue .
-
[] a sssom:MappingSet ;
- sssom:comment "." ;
- sssom:creator_id ;
- sssom:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
- sssom:mapping_date "2020-05-30" ;
+ dc1:creator orcid:1234,
+ orcid:5678 ;
+ dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ;
+ pav:authoredOn "2020-05-30"^^xsd:date ;
+ sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ;
sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" ;
sssom:mappings [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:appendage ;
+ owl:annotatedTarget z:appendage ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "APPENDAGE" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "appendage" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:appendage ;
- owl:annotatedTarget z:appendage ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_element ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0001474" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_label "bone element" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organ" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:organ ;
- owl:annotatedTarget z:organ ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:heart ;
+ owl:annotatedTarget y:heart ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hindlimb" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000948" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hindlimb" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_label "hearts" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hindlimb" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hindlimb ;
- owl:annotatedTarget x:hindlimb ],
+ sssom:subject_label "heart" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:eye ;
+ owl:annotatedTarget x:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000970" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "appendages" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_label "eye" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "APPENDAGE" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:appendage ;
- owl:annotatedTarget y:appendage ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hand ;
+ owl:annotatedTarget z:hand ;
+ sssom:confidence 8.497789e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hand" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_tissue ],
+ sssom:subject_label "manus" ;
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:appendage ;
+ owl:annotatedTarget z:appendage ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "appendag" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
+ sssom:object_label "APPENDAGE" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget y:bone ],
+ sssom:subject_label "appendages" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_element ;
+ owl:annotatedTarget x:bone_tissue ;
+ sssom:confidence 2.612039e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_tissue ;
- owl:annotatedTarget x:bone_tissue ],
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002481" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
owl:annotatedSource z:bone_tissue ;
- owl:annotatedTarget x:bone_tissue ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 2.612039e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002481" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "bone element" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget z:bone_tissue ],
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:tissue ;
+ owl:annotatedTarget z:tissue ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissue" ;
+ sssom:object_label "TISSUE" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "TISSUE" ;
+ sssom:subject_label "tissue" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:tissue ;
- owl:annotatedTarget x:tissue ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8497788951776651"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "foot" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "pes" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:foot ;
- owl:annotatedTarget x:foot ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8212623907743639"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hands" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
- owl:annotatedTarget y:hand ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ owl:annotatedSource y:hand ;
+ owl:annotatedTarget x:hand ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002398" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eye" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "manus" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:eye ;
- owl:annotatedTarget x:eye ],
+ sssom:subject_label "hands" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ owl:annotatedSource y:lung ;
+ owl:annotatedTarget z:lung ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002048" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eye" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eyes" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:eye ;
- owl:annotatedTarget x:eye ],
+ sssom:subject_label "lungs" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_element ;
- owl:annotatedTarget x:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ owl:annotatedSource z:tissue ;
+ owl:annotatedTarget y:tissue ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "tissu" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "REGION" ;
+ sssom:object_label "tissues" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "region" ;
+ sssom:subject_label "TISSUE" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:region ;
- owl:annotatedTarget z:region ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hand ;
+ owl:annotatedTarget z:hand ;
+ sssom:confidence 8e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hand" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eyes" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:eye ;
- owl:annotatedTarget z:eye ],
+ sssom:subject_label "manus" ;
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:confidence 2e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_tissue ],
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:foot ;
+ owl:annotatedTarget x:foot ;
+ sssom:confidence 8.497789e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "foot" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "pes" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
- owl:annotatedTarget z:liver ],
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:heart ;
+ owl:annotatedTarget x:heart ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hindlimb" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "heart" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hindlimb" ;
+ sssom:object_label "heart" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hindlimb" ;
+ sssom:subject_label "hearts" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hindlimb ;
- owl:annotatedTarget z:hindlimb ],
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lungs" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lung" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:lung ;
- owl:annotatedTarget y:lung ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ owl:annotatedSource z:bone_tissue ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_tissue ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "organ" ;
+ sssom:object_label "bones" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "ORGAN" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:organ ;
- owl:annotatedTarget x:organ ],
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8212623907743639"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hands" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:hand ;
- owl:annotatedTarget z:hand ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ owl:annotatedSource x:bone_tissue ;
+ owl:annotatedTarget z:bone_tissue ;
+ sssom:confidence 2e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hindlimb" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hindlimb" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hindlimb" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hindlimb ;
- owl:annotatedTarget x:hindlimb ],
+ sssom:subject_label "bone tissue" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hearts" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:heart ;
- owl:annotatedTarget y:heart ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ owl:annotatedSource z:eyeball ;
+ owl:annotatedTarget x:eyeball ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "lung" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0010230" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lung" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_label "eyeball" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lungs" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:lung ;
- owl:annotatedTarget x:lung ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_tissue ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 2e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_element ;
- owl:annotatedTarget x:bone_element ],
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7646510369310004"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:region ;
+ owl:annotatedTarget x:region ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone element" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "region" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
+ sssom:subject_label "REGION" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget y:bone ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:foot ;
+ owl:annotatedTarget z:foot ;
+ sssom:confidence 8e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "foot" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "APPENDAGE" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "appendages" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:appendage ;
- owl:annotatedTarget z:appendage ],
+ sssom:subject_label "pes" ;
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:foot ;
+ owl:annotatedTarget x:foot ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002387" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "pes" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "livers" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:liver ;
- owl:annotatedTarget z:liver ],
+ sssom:subject_label "feet" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:appendage ;
+ owl:annotatedTarget x:appendage ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "appendag" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "appendage" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
+ sssom:subject_label "appendages" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_element ],
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8497788951776651"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:hand ;
+ owl:annotatedTarget x:hand ;
+ sssom:confidence 8.212624e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget x:hand ],
+ sssom:subject_label "hands" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7646510369310004"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone element" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0001474" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_element ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.568874072230784"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:organ ;
+ owl:annotatedTarget x:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "ey" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "organ" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eye" ;
+ sssom:object_label "organ" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eyes" ;
+ sssom:subject_label "organs" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
+ sssom:subject_source y:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:eye ;
- owl:annotatedTarget x:eye ],
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 6.967305e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "bone el" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field oboInOwl:hasRelatedSynonym ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "bone element" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget z:bone_tissue ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget z:bone_tissue ],
+ sssom:subject_label "bones" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:region ;
+ owl:annotatedTarget x:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "liver" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "region" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "ORGAN" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:organ ;
- owl:annotatedTarget x:liver ],
+ sssom:subject_label "regions" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:region ;
+ owl:annotatedTarget z:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0010230" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "REGION" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eyeball" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:eyeball ;
- owl:annotatedTarget z:eyeball ],
+ sssom:subject_label "regions" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "mock data" ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource c:something ;
+ owl:annotatedTarget d:something ;
+ sssom:confidence 8.1e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "xxxxx" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
+ sssom:object_label "yyyyyy" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source d:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organ" ;
+ sssom:subject_label "YYYYY" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:organ ;
- owl:annotatedTarget z:organ ],
+ sssom:subject_source c:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:foot ;
+ owl:annotatedTarget y:foot ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "feet" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "pes" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:foot ;
- owl:annotatedTarget y:foot ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:hindlimb ;
+ owl:annotatedTarget x:hindlimb ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hindlimb" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "heart" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "hindlimb" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "ORGAN" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:organ ;
- owl:annotatedTarget x:heart ],
+ sssom:subject_label "hindlimb" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:liver ;
+ owl:annotatedTarget y:liver ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:UnspecifiedMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "liver" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "livers" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hearts" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:heart ;
- owl:annotatedTarget z:heart ],
+ sssom:subject_label "liver" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hindlimb ;
+ owl:annotatedTarget z:hindlimb ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissue" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hindlimb" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissue" ;
+ sssom:object_label "hindlimb" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "TISSUE" ;
+ sssom:subject_label "hindlimb" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:tissue ;
- owl:annotatedTarget x:tissue ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:eye ;
+ owl:annotatedTarget y:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000970" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "liver" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "eyes" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:liver ;
- owl:annotatedTarget x:liver ],
+ sssom:subject_label "eye" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:region ;
+ owl:annotatedTarget z:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:UnspecifiedMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "liver" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "livers" ;
+ sssom:object_label "REGION" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
+ sssom:subject_label "region" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
- owl:annotatedTarget y:liver ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:liver ;
+ owl:annotatedTarget x:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002107" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "liver" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8"^^ ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "foot" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "pes" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:foot ;
- owl:annotatedTarget x:foot ],
+ sssom:subject_label "bones" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "mock data" ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource a:something ;
+ owl:annotatedTarget c:something ;
+ sssom:confidence 8.3e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "lung" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "xxxxx" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lungs" ;
+ sssom:object_label "xyxyxy" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source c:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lung" ;
+ sssom:subject_label "XYXYX" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:lung ;
- owl:annotatedTarget y:lung ],
+ sssom:subject_source a:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "pes" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:foot ;
- owl:annotatedTarget x:foot ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ owl:annotatedSource y:eye ;
+ owl:annotatedTarget x:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000970" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "eye" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "pes" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:foot ;
- owl:annotatedTarget z:foot ],
+ sssom:subject_label "eyes" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "mock data" ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource c:something ;
+ owl:annotatedTarget b:something ;
+ sssom:confidence 8.4e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0010230" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "xxxxx" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eyeball" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "yxyxyx" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source b:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:eyeball ;
- owl:annotatedTarget x:eyeball ],
+ sssom:subject_label "YXYXY" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source c:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:hand ;
+ owl:annotatedTarget y:hand ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002398" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "hands" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_element ;
- owl:annotatedTarget x:bone_tissue ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:eye ;
+ owl:annotatedTarget z:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hindlimb" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000970" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hindlimb" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hindlimb" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hindlimb ;
- owl:annotatedTarget z:hindlimb ],
+ sssom:subject_label "eyes" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:hand ;
+ owl:annotatedTarget y:hand ;
+ sssom:confidence 8.212624e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendage" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hand" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "appendage" ;
+ sssom:object_label "hands" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "APPENDAGE" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:appendage ;
- owl:annotatedTarget x:appendage ],
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:eye ;
+ owl:annotatedTarget y:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000970" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "eyes" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget x:hand ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:region ;
+ owl:annotatedTarget z:region ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "appendage" ;
+ sssom:object_label "REGION" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "APPENDAGE" ;
+ sssom:subject_label "region" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:appendage ;
- owl:annotatedTarget x:appendage ],
+ owl:annotatedSource z:organ ;
+ owl:annotatedTarget x:heart ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "BAD:ORGAN" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "heart" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "ORGAN" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:lung ;
+ owl:annotatedTarget x:lung ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "lung" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:lung ;
- owl:annotatedTarget x:lung ],
+ sssom:subject_label "lungs" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:foot ;
+ owl:annotatedTarget z:foot ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002387" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
+ sssom:subject_label "pes" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget z:bone_element ],
+ owl:annotatedSource x:bone_tissue ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "bone" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "bone tissue" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:organ ;
+ owl:annotatedTarget y:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:UnspecifiedMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "organ" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "TISSUE" ;
+ sssom:object_label "organs" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissues" ;
+ sssom:subject_label "organ" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:tissue ;
- owl:annotatedTarget z:tissue ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hindlimb ;
+ owl:annotatedTarget z:hindlimb ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hindlimb" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lungs" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "hindlimb" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:lung ;
- owl:annotatedTarget y:lung ],
+ sssom:subject_label "hindlimb" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.6967304549770724"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:liver ;
+ owl:annotatedTarget y:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone el" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002107" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_label "livers" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_element ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:liver ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "BAD:ORGAN" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lung" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "ORGAN" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lungs" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:lung ;
- owl:annotatedTarget x:lung ],
+ sssom:subject_label "liver" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.568874072230784"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:organ ;
+ owl:annotatedTarget x:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "ey" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "BAD:ORGAN" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eyes" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_label "liver" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eye" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:eye ;
- owl:annotatedTarget y:eye ],
+ sssom:subject_label "ORGAN" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_tissue ;
+ owl:annotatedTarget z:bone_tissue ;
+ sssom:confidence 2.612039e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "livers" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
- owl:annotatedTarget y:liver ],
+ sssom:subject_label "bone tissue" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:appendage ;
+ owl:annotatedTarget y:appendage ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "appendage" ;
+ sssom:object_label "appendages" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "appendages" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:appendage ;
- owl:annotatedTarget x:appendage ],
+ sssom:subject_label "appendage" ;
+ sssom:subject_match_field rdfs:label,
+ skos:prefLabel ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:region ;
+ owl:annotatedTarget y:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "REGION" ;
+ sssom:object_label "regions" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "region" ;
+ sssom:subject_label "REGION" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:region ;
- owl:annotatedTarget z:region ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hands" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
- owl:annotatedTarget y:hand ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
+ owl:annotatedSource x:lung ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "BAD:ORGAN" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "ORGAN" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_element ;
- owl:annotatedTarget x:bone_tissue ],
+ sssom:subject_label "lung" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 7.64651e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone element" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "bone element" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_tissue ;
- owl:annotatedTarget x:bone_tissue ],
+ sssom:subject_label "bones" ;
+ sssom:subject_match_field oboInOwl:hasRelatedSynonym ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget y:bone ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:organ ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:UnspecifiedMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "organ" ;
+ sssom:object_label "ORGAN" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organs" ;
+ sssom:subject_label "organ" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:organ ;
- owl:annotatedTarget x:organ ],
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:lung ;
+ owl:annotatedTarget x:lung ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "lung" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "TISSUE" ;
+ sssom:object_label "lung" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissue" ;
+ sssom:subject_label "lungs" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:tissue ;
- owl:annotatedTarget z:tissue ],
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 7.64651e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone element" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hearts" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field oboInOwl:hasRelatedSynonym ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ sssom:subject_label "bone element" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
- owl:annotatedTarget y:heart ],
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:confidence 2.612039e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "bone" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "bone element" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:appendage ;
+ owl:annotatedTarget x:appendage ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "appendage" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "REGION" ;
+ sssom:object_label "appendage" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "regions" ;
+ sssom:subject_label "APPENDAGE" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:region ;
- owl:annotatedTarget z:region ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hand ;
+ owl:annotatedTarget y:hand ;
+ sssom:confidence 8.212624e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "hand" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "region" ;
+ sssom:object_label "hands" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "REGION" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:region ;
- owl:annotatedTarget x:region ],
+ sssom:subject_label "manus" ;
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_tissue ;
+ owl:annotatedTarget x:bone_tissue ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002481" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "heart" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "bone tissue" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:heart ;
- owl:annotatedTarget x:heart ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:foot ;
+ owl:annotatedTarget z:foot ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "heart" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002387" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "heart" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hearts" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:heart ;
- owl:annotatedTarget x:heart ],
+ sssom:subject_label "feet" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hand ;
+ owl:annotatedTarget y:hand ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "hands" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hands" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:hand ;
- owl:annotatedTarget x:hand ],
+ sssom:subject_label "manus" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8212623907743639"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:liver ;
+ owl:annotatedTarget z:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002107" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hands" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget y:hand ],
+ sssom:subject_label "liver" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:heart ;
+ owl:annotatedTarget x:heart ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000948" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissue" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_label "heart" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissues" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:tissue ;
- owl:annotatedTarget x:tissue ],
+ sssom:subject_label "hearts" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:organ ;
+ owl:annotatedTarget x:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "organs" ;
+ sssom:object_label "organ" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organ" ;
+ sssom:subject_label "ORGAN" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:organ ;
- owl:annotatedTarget y:organ ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:organ ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "ORGAN" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "organs" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:organ ;
- owl:annotatedTarget z:organ ],
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
- owl:annotatedTarget z:organ ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ owl:annotatedSource z:organ ;
+ owl:annotatedTarget y:organ ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "organ" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "livers" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "organs" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:liver ;
- owl:annotatedTarget y:liver ],
+ sssom:subject_label "ORGAN" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lung" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:lung ;
- owl:annotatedTarget z:lung ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget x:bone_tissue ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget z:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissues" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_label "bone tissue" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissue" ;
+ sssom:subject_label "bones" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:tissue ;
- owl:annotatedTarget y:tissue ],
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:heart ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "BAD:ORGAN" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "ORGAN" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "heart" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
- owl:annotatedTarget z:heart ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:appendage ;
+ owl:annotatedTarget z:appendage ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "appendage" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "APPENDAGE" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "appendage" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:appendage ;
- owl:annotatedTarget z:appendage ],
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "UBERON:0001474" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "bones" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:liver ;
+ owl:annotatedTarget y:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002107" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "region" ;
+ sssom:object_label "livers" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "liver" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:hindlimb ;
+ owl:annotatedTarget x:hindlimb ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "hindlimb" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "hindlimb" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "REGION" ;
+ sssom:subject_label "hindlimb" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:region ;
- owl:annotatedTarget x:region ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
- owl:annotatedTarget z:organ ],
+ sssom:subject_label "bone element" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_tissue ;
+ owl:annotatedTarget z:bone_tissue ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002481" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "feet" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ sssom:subject_label "bone tissue" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
owl:annotatedSource z:foot ;
- owl:annotatedTarget y:foot ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ owl:annotatedTarget x:foot ;
+ sssom:confidence 8e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "foot" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "regions" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_label "pes" ;
+ sssom:object_match_field oboInOwl:hasExactSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "REGION" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:region ;
- owl:annotatedTarget y:region ],
+ sssom:subject_match_field oboInOwl:hasExactSynonym ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:hand ;
+ owl:annotatedTarget z:hand ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002398" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "region" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "regions" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:region ;
- owl:annotatedTarget x:region ],
+ sssom:subject_label "manus" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:bone_tissue ;
+ owl:annotatedTarget z:bone_element ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "feet" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:foot ;
- owl:annotatedTarget z:foot ],
+ sssom:subject_label "bone tissue" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:lung ;
+ owl:annotatedTarget z:lung ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "lungs" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:lung ;
- owl:annotatedTarget z:lung ],
+ sssom:subject_label "lung" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:tissue ;
+ owl:annotatedTarget x:tissue ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "tissu" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "tissue" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
+ sssom:subject_label "TISSUE" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
+ sssom:subject_source z:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget z:bone_element ],
+ owl:annotatedSource x:tissue ;
+ owl:annotatedTarget z:tissue ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "tissue" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "TISSUE" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source z:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "tissue" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:organ ;
+ owl:annotatedTarget z:organ ;
+ sssom:confidence 8.818562e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "organ" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissues" ;
+ sssom:object_label "ORGAN" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "TISSUE" ;
+ sssom:subject_label "organ" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
+ sssom:subject_source x:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:tissue ;
- owl:annotatedTarget y:tissue ],
+ owl:annotatedSource z:heart ;
+ owl:annotatedTarget y:heart ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "UBERON:0000948" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "hearts" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 5.34602e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "bones" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ sssom:subject_match_field oboInOwl:hasBroadSynonym ;
+ sssom:subject_source z:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_tissue ;
- owl:annotatedTarget y:bone ],
+ owl:annotatedSource x:bone_element ;
+ owl:annotatedTarget y:bone ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "UBERON:0001474" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "bones" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "bone element" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 6.967305e-01 ;
+ sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "heart" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "bone el" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hearts" ;
+ sssom:object_label "bone element" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
- owl:annotatedTarget y:heart ],
+ sssom:subject_label "bones" ;
+ sssom:subject_match_field oboInOwl:hasRelatedSynonym ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:liver ;
+ owl:annotatedTarget x:liver ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002107" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hands" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "liver" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget y:hand ],
+ sssom:subject_label "livers" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:region ;
+ owl:annotatedTarget x:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:ManualMappingCuration ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissue" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "region" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "TISSUE" ;
+ sssom:object_label "region" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissue" ;
+ sssom:subject_label "REGION" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:tissue ;
- owl:annotatedTarget z:tissue ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.6967304549770724"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:lung ;
+ owl:annotatedTarget y:lung ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone el" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002048" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_label "lungs" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget y:bone ],
+ owl:annotatedSource x:eyeball ;
+ owl:annotatedTarget z:eyeball ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "UBERON:0010230" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "eyeball" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:appendage ;
+ owl:annotatedTarget y:appendage ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "appendages" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "appendage" ;
+ sssom:subject_label "APPENDAGE" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:appendage ;
- owl:annotatedTarget y:appendage ],
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget x:hand ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ owl:annotatedSource y:tissue ;
+ owl:annotatedTarget z:tissue ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "tissu" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
+ sssom:object_label "TISSUE" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget y:bone ],
+ sssom:subject_label "tissues" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:eye ;
+ owl:annotatedTarget y:eye ;
+ sssom:confidence 5.688741e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "ey" ;
sssom:object_category "biolink:AnatomicalEntity" ;
sssom:object_label "eyes" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "eye" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:eye ;
- owl:annotatedTarget y:eye ],
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:heart ;
+ owl:annotatedTarget z:heart ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0000948" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eyes" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:eye ;
- owl:annotatedTarget y:eye ],
+ sssom:subject_label "hearts" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:hand ;
+ owl:annotatedTarget z:hand ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002398" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_element ],
+ sssom:subject_label "hands" ;
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:tissue ;
+ owl:annotatedTarget x:tissue ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:LogicalReasoning ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "tissu" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "organ" ;
+ sssom:object_label "tissue" ;
sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "ORGAN" ;
+ sssom:subject_label "tissues" ;
sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
+ sssom:subject_source y:example ],
+ [ a owl:Axiom ;
+ rdfs:comment "." ;
owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:organ ;
- owl:annotatedTarget x:organ ],
+ owl:annotatedSource x:region ;
+ owl:annotatedTarget y:region ;
+ sssom:confidence 8.407144e-01 ;
+ sssom:mapping_justification semapv:UnspecifiedMatching ;
+ sssom:mapping_tool "rdf_matcher" ;
+ sssom:match_string "region" ;
+ sssom:object_category "biolink:AnatomicalEntity" ;
+ sssom:object_label "regions" ;
+ sssom:object_match_field rdfs:label ;
+ sssom:object_source y:example ;
+ sssom:subject_category "biolink:AnatomicalEntity" ;
+ sssom:subject_label "region" ;
+ sssom:subject_match_field rdfs:label ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource x:eye ;
+ owl:annotatedTarget z:eye ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "UBERON:0000970" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source z:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "eye" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:eye ;
- owl:annotatedTarget z:eye ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source x:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:lung ;
+ owl:annotatedTarget x:lung ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0002048" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
+ sssom:object_label "lung" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_tissue ;
- owl:annotatedTarget x:bone_element ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source z:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource y:bone ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 7.387961e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
+ sssom:match_string "UBERON:0001474" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "bone element" ;
+ sssom:object_match_field oboInOwl:hasDbXref ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
sssom:subject_label "bones" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget z:bone_tissue ],
+ sssom:subject_match_field oboInOwl:hasDbXref ;
+ sssom:subject_source y:example ],
[ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
+ rdfs:comment "." ;
+ owl:annotatedProperty owl:equivalentClass ;
+ owl:annotatedSource z:bone_element ;
+ owl:annotatedTarget x:bone_element ;
+ sssom:confidence 2.612039e-01 ;
+ sssom:mapping_justification semapv:LexicalMatching ;
sssom:mapping_tool "rdf_matcher" ;
sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
+ sssom:object_label "bone element" ;
+ sssom:object_match_field oboInOwl:hasBroadSynonym ;
+ sssom:object_source x:example ;
sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field