The example quarto notebook no longer compiles

[DOSull]

A notebook that I had no problems building previously now no longer works.

I know marimo updates regularly so wonder if something has changed to break the quarto extension? I've tried building the sample file in the README.md and get the following errors:

(base) david@Mac dosull.github.io % quarto preview ~/Documents/code/dosull.github.io/posts/test-marimo/index.qmd --no-browser --no-watch-inputs
[1/2] posts/test-marimo/index.qmd
Installed 23 packages in 169ms
Bytecode compiled 1780 files in 764ms
Traceback (most recent call last):
  File "~/Documents/code/dosull.github.io/_extensions/marimo-team/marimo/extract.py", line 18, in <module>
    from marimo._convert.markdown.markdown import (
ModuleNotFoundError: No module named 'marimo._convert.markdown.markdown'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "~/Documents/code/dosull.github.io/_extensions/marimo-team/marimo/extract.py", line 27, in <module>
    from marimo._cli.convert.markdown import (  # type: ignore[import, no-redef]
ModuleNotFoundError: No module named 'marimo._cli.convert.markdown'
Error running filter /Applications/quarto/share/filters/main.lua:
Error running uv (error code 1): <no output>
stack traceback:
        ...osull.github.io/_extensions/marimo-team/marimo/utils.lua:110: in function 'utils.run_marimo'
        ...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:21: in function <...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:20>
        [C]: in ?
        [C]: in method 'walk'
        ...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:167: in function <...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:161>
        [C]: in ?
        [C]: in method 'walk'
        /Applications/quarto/share/pandoc/datadir/_utils.lua:607: in function '_utils.walk'
        /Applications/quarto/share/filters/main.lua:572: in local 'checked_walk'
        /Applications/quarto/share/filters/main.lua:627: in function 'run_emulated_filter'
        /Applications/quarto/share/filters/main.lua:1314: in local 'callback'
        [string "if pandoc.system.os == "mingw32" then..."]:778: in field 'withScriptFile'
        /Applications/quarto/share/filters/main.lua:1330: in upvalue 'run_emulated_filter_chain'
        /Applications/quarto/share/filters/main.lua:1368: in function </Applications/quarto/share/filters/main.lua:1365>
stack traceback:
        ...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:167: in function <...hub.io/_extensions/marimo-team/marimo/marimo-execute.lua:161>
        [C]: in ?
        [C]: in method 'walk'
        /Applications/quarto/share/pandoc/datadir/_utils.lua:607: in function '_utils.walk'
        /Applications/quarto/share/filters/main.lua:572: in local 'checked_walk'
        /Applications/quarto/share/filters/main.lua:627: in function 'run_emulated_filter'
        /Applications/quarto/share/filters/main.lua:1314: in local 'callback'
        [string "if pandoc.system.os == "mingw32" then..."]:778: in field 'withScriptFile'
        /Applications/quarto/share/filters/main.lua:1330: in upvalue 'run_emulated_filter_chain'
        /Applications/quarto/share/filters/main.lua:1368: in function </Applications/quarto/share/filters/main.lua:1365>
stack traceback:
        /Applications/quarto/share/pandoc/datadir/_utils.lua:607: in function '_utils.walk'
        /Applications/quarto/share/filters/main.lua:572: in local 'checked_walk'
        /Applications/quarto/share/filters/main.lua:627: in function 'run_emulated_filter'
        /Applications/quarto/share/filters/main.lua:1314: in local 'callback'
        [string "if pandoc.system.os == "mingw32" then..."]:778: in field 'withScriptFile'
        /Applications/quarto/share/filters/main.lua:1330: in upvalue 'run_emulated_filter_chain'
        /Applications/quarto/share/filters/main.lua:1368: in function </Applications/quarto/share/filters/main.lua:1365>
WARN: Error encountered when rendering files

[DOSull]

It looks to me like the current version of marimo no longer has this module

ModuleNotFoundError: No module named 'marimo._convert.markdown.markdown'

and that the quarto marimo extension hasn't been updated to reflected changes in the structure of marimo modules hence this issue. That being the case, how can I force the extension to use a version of marimo that does have the required structure, i.e. one from 8 or 10 months ago when this was last worked on? I've tried putting

pyproject: |
  dependencies:
  - marimo==0.14.0

in the Quarto file yaml, or even just marimo-version: 0.14.0 but that doesn't seem to make any difference.

It's frustrating not to be able to build a page that worked fine several months ago.

Has this extension effectively been abandoned?

[losnappas]

It looks like a fix was attempted(?) 0118cc6 but it didn't take.

I got this working with the following change: in your repo, in _extensions/marimo-team/marimo/utils.lua, make this change

@@ -0,0 +1,1 @@
+3.13
diff --git a/README.md b/README.md
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/_extensions/marimo-team/marimo/utils.lua b/_extensions/marimo-team/marimo/utils.lua
index 441368788b..b5acddf6b0 100644
--- a/_extensions/marimo-team/marimo/utils.lua
+++ b/_extensions/marimo-team/marimo/utils.lua
@@ -56,7 +56,7 @@
     return pandoc.json.decode(
         pandoc.pipe(
             "uv",
-            { "run", "--with", "marimo", command_script },
+            { "run", "--with", "marimo==0.14.16", command_script },
             header
         )
     )

And remove any external-env: true if you have those. Possibly you could do external-env: true somewhere and install that version of marimo to the env, idk.

[DOSull]

Setitng the marimo version in _extensions/marimo-team/marimo/utils.lua per #44 (comment) worked for my set up. Thank you @losnappas

Obviously would be good to get it back up and running in the current release of marimo!