updating template [ci skip]

Author: cwehmeyer

manuscript/livecoms.cls

@@ -90,6 +90,8 @@
 \if@onehalfspacing\linespread{1.5}\fi
 \if@doublespacing\linespread{2.0}\fi
 
+\emergencystretch 3em
+
 \RequirePackage{graphicx,xcolor}
 \definecolor{LiveCoMSDarkBlue}{HTML}{273B81}
 \definecolor{LiveCoMSLightBlue}{HTML}{0A9DD9}
@@ -267,7 +269,7 @@
 %\lfoot{\small\color{LiveCoMSMediumGrey}Received: \@publisheddatereceived \\
 %  Accepted: \@publisheddateaccepted}%
 \cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}%
-\rfoot{\small\color{LiveCoMSMediumGrey}DOI: \href{https://dx.doi.org/\@publishedDOI}{\@publishedDOI}\\
+\rfoot{\small\color{LiveCoMSMediumGrey}\href{https://doi.org/\@publishedDOI}{https://doi.org/\@publishedDOI}\\
   {\it Living J. Comp. Mol. Sci.} \@publishedyear, \@publishedvolume, \@publishedarticlenum }%
 \else
 \cfoot{\small\color{white} \vspace{\baselineskip} \small\color{LiveCoMSMediumGrey} \thepage\space of\space\pageref{LastPage}}%

manuscript/manuscript.tex

@@ -31,7 +31,7 @@
 %%% ARTICLE SETUP
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-\title{Introduction to Markov state modeling with the PyEMMA software --- v\versionnumber}
+\title{Introduction to Markov state modeling with the PyEMMA software [Article v\versionnumber]}
 
 \author[1\authfn{1}*]{Christoph Wehmeyer}
 \author[1\authfn{1}]{Martin K. Scherer}
@@ -55,13 +55,12 @@
 %%% Fill out these parameters when available
 %%% These are used when the "pubversion" option is invoked
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
 \pubDOI{10.XXXX/YYYYYYY}
 \pubvolume{<volume>}
 \pubyear{<year>}
 \articlenum{<number>}
-\datereceived{July, 27, 2018}
-\dateaccepted{Month, Day, Year}
+\datereceived{Day Month Year}
+\dateaccepted{Day Month Year}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %%% ARTICLE START
@@ -651,7 +650,8 @@ \section{Author Contributions}
 MKS developed the software infrastructure, test, and install environment.
 CW, MKS, TH, BEH, SO, and FN wrote the manuscript.
 
-For a more detailed description of author contributions, see the GitHub issue tracking and changelog at \githubrepository{}.
+For a more detailed description of author contributions,
+see the GitHub issue tracking and changelog at \githubrepository.
 
 \section{Other Contributions}
 %%%%%%%%%%%%%%%
@@ -665,7 +665,8 @@ \section{Other Contributions}
 %%%%%%%%%%%%%%%
 We are grateful to Nuria Plattner for providing the pentapeptide simulation data and Camilla Ventura Santos as well as the entire computational molecular biology group for valuable discussion and feedback.
 
-For a more detailed description of contributions from the community and others, see the GitHub issue tracking and changelog at \githubrepository{}.
+For a more detailed description of contributions from the community and others,
+see the GitHub issue tracking and changelog at \githubrepository.
 
 \section{Potentially Conflicting Interests}
 %%%%%%%

manuscript/vancouver-livecoms.bst

@@ -888,7 +888,7 @@ FUNCTION {format.note}
       'skip$
       { "\urlprefix\url{" url * "}" * output }
     if$}
-    { "\href{https://dx.doi.org/" doi * "}{\doiprefix \detokenize{" * doi * "}}" * output }
+    { "\href{https://doi.org/" doi * "}{\doiprefix \detokenize{" * doi * "}}" * output }
   if$
  note empty$
     { "" }
@@ -1924,7 +1924,7 @@ FUNCTION {begin.bib}
 %  "\providecommand{\urlprefix}{URL }"      ++++ EMPTIED by default
   "\providecommand{\urlprefix}{}"
   write$ newline$
-  "\providecommand{\doiprefix}{doi: }"
+  "\providecommand{\doiprefix}{https://doi.org/}"
   write$ newline$
 }
 EXECUTE {begin.bib}