interpret eigenvectors in case 2 (#147)

Author: cwehmeyer

notebooks/04-msm-analysis.ipynb

@@ -436,7 +436,11 @@
    "source": [
     "Again, we have the $(1,\\dots,1)^\\top$ first right eigenvector of the stationary process.\n",
     "\n",
-    "The second to fourth right eigenvectors illustrate the three slowest processes.\n",
+    "The second to fourth right eigenvectors illustrate the three slowest processes which are (in that order):\n",
+    "\n",
+    "- rotation of the $\\Phi$ dihedral,\n",
+    "- rotation of the $\\Psi$ dihedral when $\\Phi\\approx-2$ rad, and\n",
+    "- rotation of the $\\Psi$ dihedral when $\\Phi\\approx1$ rad.\n",
     "\n",
     "Eigenvectors five, six, and seven indicate further processes which, however, relax faster than the lag time and cannot be resolved clearly.\n",
     "\n",