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mentioned pentapeptide repetition (#147)
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notebooks/07-hidden-markov-state-models.ipynb

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"## Case 3: another molecular dynamics data set (pentapeptide)\n",
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"We fetch the pentapeptide data set and prepare the discrete trajectories as explained in the showcase notebook. There, we already learned that $5$ metastable states are a good choice for our model. According to our implied timescales plot, we can resolve four processes for up to $2.5$ ns in our data. "
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"Let us now repeat the analysis of our pentapeptide using an HMM.\n",
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"\n",
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"We fetch the pentapeptide data set and prepare the discrete trajectories as explained in the showcase notebook.\n",
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"There, we already learned that $5$ metastable states are a good choice for our model.\n",
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"According to our implied timescales plot, we can resolve four processes for up to $2.5$ ns in our data. "
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