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manuscript/manuscript.tex

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@@ -361,8 +361,7 @@ \subsection{Analyzing the MSM}
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\end{equation}
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where $\pi_j$ denotes the MSM stationary weight of the $j^\textrm{th}$ microstate.
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In order to interpret the slowest relaxation timescales, we refer to the (right) eigenvectors of the MSM.
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We here chose the right eigenvectors as they are independent of the stationary distribution of the MSM.
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In order to interpret the slowest relaxation timescales, we refer to the (right) eigenvectors of the MSM, as they are independent of the stationary distribution of the MSM.
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This enables us to specifically study what conformational changes are happening on a particular time scale independently of the equilbrium distribution.
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The first right eigenvector corresponds to the stationary process and its eigenvalue is the Perron eigenvalue~$1$.
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The second right eigenvector, on the other hand, corresponds to the slowest process in the system.

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