exchanged citation for hmm section

[ci skip]

Author: marscher

notebooks/00-pentapeptide-showcase.ipynb

@@ -1323,7 +1323,7 @@
     "\n",
     "## Hidden Markov models [➜ 📓](07-hidden-markov-state-models.ipynb)\n",
     "\n",
-    "Another way of approaching metastable dynamics is with hidden Markov models (HMMs) <a id=\"ref-14\" href=\"#cite-hmm-baum-welch-alg\">baum-1970</a>.\n",
+    "Another way of approaching metastable dynamics is with hidden Markov models (HMMs) <a id=\"ref-14\" href=\"#cite-noe-proj-hid-msm\">noe-15</a>.\n",
     "HMMs model the dynamics between so-called hidden states which we initiate from the metastable states found by PCCA++.\n",
     "The estimation is less prone to discretization errors as we do not assume Markovianity in the space of our cluster centers.\n",
     "It further provides a natural coarse graining into a given number of hidden states,\n",
@@ -1758,7 +1758,7 @@
     "\n",
     "<a id=\"cite-noe-dy-neut-scatt\"/><sup><a href=#ref-13>[^]</a></sup>Benjamin Lindner and Zheng Yi and Jan-Hendrik Prinz and Jeremy C. Smith and Frank Noé. 2013. _Dynamic neutron scattering from conformational dynamics. I. Theory and Markov models_. [URL](https://doi.org/10.1063/1.4824070)\n",
     "\n",
-    "<a id=\"cite-hmm-baum-welch-alg\"/><sup><a href=#ref-14>[^]</a></sup>Leonard E. Baum and Ted Petrie and George Soules and Norman Weiss. 1970. _A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains_. [URL](http://www.jstor.org/stable/2239727)\n",
+    "<a id=\"cite-noe-proj-hid-msm\"/><sup><a href=#ref-14>[^]</a></sup>Frank Noé and Hao Wu and Jan-Hendrik Prinz and Nuria Plattner. 2013. _Projected and hidden Markov models for calculating kinetics and metastable states of complex molecules_. [URL](https://doi.org/10.1063/1.4828816)\n",
     "\n"
    ]
   }
@@ -1779,7 +1779,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.5"
+   "version": "3.6.6"
   },
   "toc": {
    "base_numbering": 1,