A first basic implementation is out now, more to follow soon... The new MS2Query appraoch has a higher accuracy and has a much simpler and faster underlying algorithm. We will hopefully soon share a first preprint as well, showing all the benchmarking.
The current runably version still requires to create the library files, which takes some time for the first run.
Soon this will be much easier and faster. We will add downloadable precomputed files, make MS2Query pip installable, add a database and allow faster MS2DeepScore searching.
The tutorial for the current prototype can be found in notebooks/tutorial.