Add glass related

Author: Philipp von Hartrott

src/ontology/components/pmdco-materials.owl

@@ -1749,7 +1749,7 @@ AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> <https://w3
 AnnotationAssertion(<https://w3id.org/pmd/co/PMD_0000060> <https://w3id.org/pmd/co/PMD_0050049> "true"^^xsd:boolean)
 SubClassOf(<https://w3id.org/pmd/co/PMD_0050049> <https://w3id.org/pmd/co/PMD_0050040>)
 
-# Class: <https://w3id.org/pmd/co/PMD_0050050> (glass-ceramics)
+# Class: <https://w3id.org/pmd/co/PMD_0050050> (glass-ceramic)
 
 SubClassOf(<https://w3id.org/pmd/co/PMD_0050050> <https://w3id.org/pmd/co/PMD_0000661>)
 SubClassOf(<https://w3id.org/pmd/co/PMD_0050050> <https://w3id.org/pmd/co/PMD_0050049>)

src/ontology/components/pmdco-qualities.owl

@@ -158,6 +158,8 @@ Declaration(Class(pmdco:PMD_0020233))
 Declaration(Class(pmdco:PMD_0020237))
 Declaration(Class(pmdco:PMD_0020241))
 Declaration(Class(pmdco:PMD_0020243))
+Declaration(Class(pmdco:PMD_0020247))
+Declaration(Class(pmdco:PMD_0020251))
 Declaration(Class(pmdco:PMD_0025001))
 Declaration(Class(pmdco:PMD_0025002))
 Declaration(Class(pmdco:PMD_0025003))
@@ -596,10 +598,11 @@ AnnotationAssertion(skos:definition pmdco:PMD_0000789 "The indentation hardness
 AnnotationAssertion(pmdco:PMD_0000060 pmdco:PMD_0000789 "true"^^xsd:boolean)
 SubClassOf(pmdco:PMD_0000789 pmdco:PMD_0000773)
 
-# Class: pmdco:PMD_0000790 (index of refraction)
+# Class: pmdco:PMD_0000790 (refraction (optical))
 
-AnnotationAssertion(rdfs:label pmdco:PMD_0000790 "index of refraction"@en)
-AnnotationAssertion(skos:definition pmdco:PMD_0000790 "The index of refraction is an optical property representing a measure of how much light bends when passing through a material, affecting its optical properties."@en)
+AnnotationAssertion(rdfs:comment pmdco:PMD_0000790 "e.g., air into glass"@en)
+AnnotationAssertion(rdfs:label pmdco:PMD_0000790 "refraction (optical)"@en)
+AnnotationAssertion(skos:definition pmdco:PMD_0000790 "the bending of light as it passes from one medium into another due to a change in the light’s speed."@en)
 AnnotationAssertion(pmdco:PMD_0000060 pmdco:PMD_0000790 "true"^^xsd:boolean)
 SubClassOf(pmdco:PMD_0000790 pmdco:PMD_0000877)
 DisjointClasses(pmdco:PMD_0000790 pmdco:PMD_0000911)
@@ -1235,6 +1238,18 @@ AnnotationAssertion(skos:definition pmdco:PMD_0020243 "an average size of the gr
 SubClassOf(pmdco:PMD_0020243 pmdco:PMD_0020131)
 SubClassOf(pmdco:PMD_0020243 ObjectSomeValuesFrom(obo:RO_0000080 pmdco:PMD_0020106))
 
+# Class: pmdco:PMD_0020247 (dispersion)
+
+AnnotationAssertion(rdfs:comment pmdco:PMD_0020247 "dispersion in optical glass is a refractiion dependent on wavelength"@en)
+AnnotationAssertion(rdfs:label pmdco:PMD_0020247 "dispersion"@en)
+SubClassOf(pmdco:PMD_0020247 pmdco:PMD_0000790)
+
+# Class: pmdco:PMD_0020251 (biocompatible)
+
+AnnotationAssertion(rdfs:label pmdco:PMD_0020251 "biocompatible"@en)
+AnnotationAssertion(skos:definition pmdco:PMD_0020251 "bioactivity without causing harmful or unacceptable biological responses (toxicity, inflammation, immune reaction) and performce of its intended function or integration with the tissue."@en)
+SubClassOf(pmdco:PMD_0020251 pmdco:PMD_0010023)
+
 # Class: pmdco:PMD_0025001 (composition)
 
 AnnotationAssertion(obo:IAO_0000116 pmdco:PMD_0025001 "There's a dfference between composition and chemical compositon for the following reason: chemical compositon is relevant when the mass/volume/mole proportions of chemical elements(!) are identified, whlist composition includes proportions of molecules, other pure chemical substances, or even proptions of objects (in an object aggregate)."@en)

src/ontology/imports/chebi_terms.txt

@@ -289,7 +289,14 @@ CHEBI:194541	#oganesson atom
 # CHEBI:52624	#antimony-121 atom	
 # CHEBI:52626	#antimony-123 atom	
 # CHEBI:52453	#xenon-129 atom	
-CHEBI:29362	#ethylene group
-
-
+CHEBI:29362	#ethylene Group
+CHEBI:30563     #silicon dioxde
+CHEBI:32145     #sodium hydroxide
+CHEBI:31344     #calcium oxide
+CHEBI:30163     #diboron trioxide
+CHEBI:81045     #lead oxide
+CHEBI:30187     #aluminum oxide
+CHEBI:37376     #tetraphosphorus decaoxide
+CHEBI:33303     #chalcogen
+CHEBI:17051     #fluoride