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Philipp von Hartrott
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Merge remote-tracking branch 'refs/remotes/origin/main'
2 parents c9ea12b + 670525e commit 20093c9

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-24
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docs/navigator.yaml

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@@ -63,6 +63,11 @@ sections:
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md: PMDco User Guide.md
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icon: book-open
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- title: Term Obsoletion
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href: obsolete-ontology-terms.html
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md: obsolete ontology terms.md
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icon: delete
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- title: Reused Ontologies
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href: reused-ontologies.html
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md: Reused ontologies.md
@@ -234,6 +239,9 @@ icons:
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settings:
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path: "M12 15a3 3 0 1 0 0-6 3 3 0 0 0 0 6z M19.4 15a1.65 1.65 0 0 0 .33 1.82l.06.06a2 2 0 0 1 0 2.83 2 2 0 0 1-2.83 0l-.06-.06a1.65 1.65 0 0 0-1.82-.33 1.65 1.65 0 0 0-1 1.51V21a2 2 0 0 1-2 2 2 2 0 0 1-2-2v-.09A1.65 1.65 0 0 0 9 19.4a1.65 1.65 0 0 0-1.82.33l-.06.06a2 2 0 0 1-2.83 0 2 2 0 0 1 0-2.83l.06-.06a1.65 1.65 0 0 0 .33-1.82 1.65 1.65 0 0 0-1.51-1H3a2 2 0 0 1-2-2 2 2 0 0 1 2-2h.09A1.65 1.65 0 0 0 4.6 9a1.65 1.65 0 0 0-.33-1.82l-.06-.06a2 2 0 0 1 0-2.83 2 2 0 0 1 2.83 0l.06.06a1.65 1.65 0 0 0 1.82.33H9a1.65 1.65 0 0 0 1-1.51V3a2 2 0 0 1 2-2 2 2 0 0 1 2 2v.09a1.65 1.65 0 0 0 1 1.51 1.65 1.65 0 0 0 1.82-.33l.06-.06a2 2 0 0 1 2.83 0 2 2 0 0 1 0 2.83l-.06.06a1.65 1.65 0 0 0-.33 1.82V9a1.65 1.65 0 0 0 1.51 1H21a2 2 0 0 1 2 2 2 2 0 0 1-2 2h-.09a1.65 1.65 0 0 0-1.51 1z"
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delete:
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path: "M21 4H8l-7 8 7 8h13a2 2 0 0 0 2-2V6a2 2 0 0 0-2-2z"
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# Search
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search:
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path: "M11 19a8 8 0 1 0 0-16 8 8 0 0 1 0 16z M21 21l-4.35-4.35"

src/ontology/components/materials-listing.owl

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@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/components/materials-listing.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/components/materials-listing.owl>
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Annotation(owl:versionInfo "2026-02-20")
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<https://w3id.org/pmd/co/releases/2026-02-23/components/materials-listing.owl>
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<https://w3id.org/pmd/co/PMD_0000000>))
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Declaration(Class(<https://w3id.org/pmd/co/PMD_0000546>))

src/ontology/imports/bfo_import.owl

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@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/bfo_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/bfo_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/bfo_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/bfo/2020/notime/bfo.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))

src/ontology/imports/chebi_import.owl

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@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/chebi_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/chebi_import.owl>
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Annotation(owl:versionInfo "2026-02-20")
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/chebi_import.owl>
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_137980>))
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Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_18248>))

src/ontology/imports/cob_import.owl

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@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/cob_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/cob_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/cob_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob-base.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
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Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000057>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000116>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
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Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/description>))

src/ontology/imports/iao_import.owl

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@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/iao_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/iao_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/iao_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000017>))

src/ontology/imports/nfdicore_import.owl

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@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/nfdicore_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/nfdicore_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/nfdicore_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <https://nfdi.fiz-karlsruhe.de/ontology/3.0.4>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000004>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
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Declaration(DataProperty(<https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001008>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000112>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000119>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
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Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/bibliographicCitation>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/created>))

src/ontology/imports/obi_import.owl

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@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
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Ontology(<https://w3id.org/pmd/co/imports/obi_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/obi_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/obi_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/obi/2025-12-18/obi.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000016>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000119>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000232>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000233>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
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Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
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Declaration(AnnotationProperty(<http://purl.org/dc/terms/created>))
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AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/IAO_0000233> "The 'tracker item' can associate a tracker with a specific ontology term."@en)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000233> "term tracker item"@en)
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# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0100001> (term replaced by)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IAO_0100001> "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/IAO_0100001> "Person:Alan Ruttenberg"@en)
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AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/IAO_0100001> "Add as annotation triples in the granting ontology"@en)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0100001> "term replaced by"@en)
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# Annotation Property: <http://purl.org/dc/elements/1.1/source> (Source)
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AnnotationAssertion(rdfs:comment <http://purl.org/dc/elements/1.1/source> "A reference to a resource from which the present resource
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/OBI_0000011> "branch derived")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000232> <http://purl.obolibrary.org/obo/OBI_0000011> "6/11/9: Edited at workshop. Used to include: is initiated by an agent")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000232> <http://purl.obolibrary.org/obo/OBI_0000011> "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)")
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/OBI_0000011> <http://purl.obolibrary.org/obo/COB_0000035>)
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AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBI_0000011> "obsolete planned process")
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# Class: <http://purl.obolibrary.org/obo/OBI_0000067> (evaluant role)

src/ontology/imports/ro_import.owl

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Ontology(<https://w3id.org/pmd/co/imports/ro_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/ro_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/ro_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2025-12-17/ro.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
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Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

src/ontology/imports/stato_import.owl

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Ontology(<https://w3id.org/pmd/co/imports/stato_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-20/imports/stato_import.owl>
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<https://w3id.org/pmd/co/releases/2026-02-23/imports/stato_import.owl>
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Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/stato/releases/2025-02-23/stato.owl>)
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Annotation(owl:versionInfo "2026-02-20")
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Annotation(owl:versionInfo "2026-02-23")
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Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/STATO_0000102>))
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Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))

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