Merge pull request #335 from materialdigital/334-import-time-ontology

import time ontology

Author: joergwa

docs/odk-workflows/RepositoryFileStructure.md

@@ -25,6 +25,7 @@ These are the current imports in PMDCO
 | uo | http://purl.obolibrary.org/obo/uo.owl | slme |
 | cob | http://purl.obolibrary.org/obo/cob.owl | custom |
 | nfdicore | https://raw.githubusercontent.com/ISE-FIZKarlsruhe/nfdicore/refs/tags/v3.0.4/nfdicore-base.owl | slme |
+| time | https://raw.githubusercontent.com/w3c/sdw/gh-pages/time/rdf/time.ttl | slme |
 ## Components
 Components, in contrast to imports, are considered full members of the ontology. This means that any axiom in a component is also included in the ontology base - which means it is considered _native_ to the ontology. While this sounds complicated, consider this: conceptually, no component should be part of more than one ontology. If that seems to be the case, we are most likely talking about an import. Components are often not needed for ontologies, but there are some use cases:
 

src/ontology/Makefile

@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                f5a9d1ce153a46ffaef9ec764e1d72263a3f2459ad54de1c4a20829b9affd945
+CONFIG_HASH=                799b43df9d1d26346103cbdacb63c0a80550e5c42db371ea9f878e01030b3928
 
 
 # ----------------------------------------
@@ -188,7 +188,7 @@ all_main: $(MAIN_FILES)
 # ----------------------------------------
 
 
-IMPORTS =  bfo ro iao obi chebi stato uo cob nfdicore
+IMPORTS =  bfo ro iao obi chebi stato uo cob nfdicore time
 
 IMPORT_ROOTS = $(patsubst %, $(IMPORTDIR)/%_import, $(IMPORTS))
 IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
@@ -483,6 +483,25 @@ $(IMPORTDIR)/nfdicore_import.owl: $(MIRRORDIR)/nfdicore.owl $(IMPORTDIR)/nfdicor
 		 repair --merge-axiom-annotations true \
 		 $(ANNOTATE_CONVERT_FILE)
 
+## Module for ontology: time (slme)
+$(IMPORTDIR)/time_import.owl: $(MIRRORDIR)/time.owl $(IMPORTDIR)/time_terms.txt $(IMPORTSEED) | all_robot_plugins
+	$(ROBOT) annotate --input $< --remove-annotations \
+		 odk:normalize --add-source true \
+		 extract --term-file $(IMPORTDIR)/time_terms.txt $(T_IMPORTSEED) \
+		         --copy-ontology-annotations true --force true \
+		         --individuals include \
+		         --method SUBSET \
+		 remove $(foreach p, $(ANNOTATION_PROPERTIES), --term $(p)) \
+		        --term rdfs:label \
+		        --term IAO:0000115 \
+		        --term OMO:0002000 \
+		        --term-file $(IMPORTDIR)/time_terms.txt $(T_IMPORTSEED) \
+		        --select complement --select annotation-properties \
+		 odk:normalize --base-iri https://w3id.org/pmd \
+		               --subset-decls true --synonym-decls true \
+		 repair --merge-axiom-annotations true \
+		 $(ANNOTATE_CONVERT_FILE)
+
 endif # IMP=true
 
 .PHONY: refresh-imports
@@ -646,6 +665,13 @@ mirror-nfdicore: | $(TMPDIR)
 	$(ROBOT) convert -I https://raw.githubusercontent.com/ISE-FIZKarlsruhe/nfdicore/refs/tags/v3.0.4/nfdicore-base.owl -o $(TMPDIR)/$@.owl
 
 
+## ONTOLOGY: time
+.PHONY: mirror-time
+.PRECIOUS: $(MIRRORDIR)/time.owl
+mirror-time: | $(TMPDIR)
+	$(ROBOT) convert -I https://raw.githubusercontent.com/w3c/sdw/gh-pages/time/rdf/time.ttl -o $(TMPDIR)/$@.owl
+
+
 $(MIRRORDIR)/%.owl: mirror-% | $(MIRRORDIR)
 	if [ -f $(TMPDIR)/mirror-$*.owl ]; then if cmp -s $(TMPDIR)/mirror-$*.owl $@ ; then echo "Mirror identical, ignoring."; else echo "Mirrors different, updating." &&\
 		cp $(TMPDIR)/mirror-$*.owl $@; fi; fi

src/ontology/catalog-v001.xml

@@ -10,6 +10,7 @@
     <uri name="https://w3id.org/pmd/co/imports/uo_import.owl" uri="imports/uo_import.owl" />
     <uri name="https://w3id.org/pmd/co/imports/cob_import.owl" uri="imports/cob_import.owl" />
     <uri name="https://w3id.org/pmd/co/imports/nfdicore_import.owl" uri="imports/nfdicore_import.owl" />
+    <uri name="https://w3id.org/pmd/co/imports/time_import.owl" uri="imports/time_import.owl" />
     <uri name="https://w3id.org/pmd/co/components/imports-edit.owl" uri="components/imports-edit.owl" />
     <uri name="https://w3id.org/pmd/co/components/pmdco-shared.owl" uri="components/pmdco-shared.owl" />
     <uri name="https://w3id.org/pmd/co/components/pmdco-axioms-shared.owl" uri="components/pmdco-axioms-shared.owl" />

src/ontology/imports/time_import.owl

@@ -0,0 +1,37 @@
+Prefix(:=<https://w3id.org/pmd/co/imports/time_import.owl#>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+
+
+Ontology(<https://w3id.org/pmd/co/imports/time_import.owl>
+<https://w3id.org/pmd/co/releases/2026-02-20/imports/time_import.owl>
+Annotation(<http://purl.org/dc/elements/1.1/source> <http://www.w3.org/2006/time#2016>)
+Annotation(owl:versionInfo "2026-02-20")
+
+Declaration(DataProperty(<http://www.w3.org/2006/time#inXSDDateTime>))
+Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/created>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/creator>))
+Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
+Declaration(AnnotationProperty(<http://www.w3.org/2004/02/skos/core#definition>))
+Declaration(AnnotationProperty(<http://www.w3.org/2004/02/skos/core#example>))
+Declaration(Datatype(xsd:date))
+
+############################
+#   Data Properties
+############################
+
+# Data Property: <http://www.w3.org/2006/time#inXSDDateTime> (in XSD Date-Time)
+
+AnnotationAssertion(rdfs:label <http://www.w3.org/2006/time#inXSDDateTime> "en fecha-tiempo XSD"@es)
+AnnotationAssertion(rdfs:label <http://www.w3.org/2006/time#inXSDDateTime> "in XSD Date-Time"@en)
+AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> <http://www.w3.org/2006/time#inXSDDateTime> "Posición de un instante, expresado utilizando xsd:dateTime."@es)
+AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> <http://www.w3.org/2006/time#inXSDDateTime> "Position of an instant, expressed using xsd:dateTime"@en)
+
+
+
+)

src/ontology/imports/time_terms.txt

@@ -0,0 +1 @@
+http://www.w3.org/2006/time#inXSDDateTime

src/ontology/pmdco-edit.owl

@@ -28,6 +28,7 @@ Import(<https://w3id.org/pmd/co/imports/nfdicore_import.owl>)
 Import(<https://w3id.org/pmd/co/imports/obi_import.owl>)
 Import(<https://w3id.org/pmd/co/imports/ro_import.owl>)
 Import(<https://w3id.org/pmd/co/imports/stato_import.owl>)
+Import(<https://w3id.org/pmd/co/imports/time_import.owl>)
 Import(<https://w3id.org/pmd/co/imports/uo_import.owl>)
 Annotation(dcterms:creator <https://orcid.org/0000-0001-6772-1943>)
 Annotation(dcterms:creator <https://orcid.org/0000-0001-7192-7143>)
@@ -64,6 +65,7 @@ Declaration(AnnotationProperty(dcterms:title))
 Declaration(AnnotationProperty(<http://usefulinc.com/ns/doap#repository>))
 
 
+
 AnnotationAssertion(rdfs:label <https://orcid.org/0000-0001-6772-1943> "Martin Glauer")
 AnnotationAssertion(rdfs:label <https://orcid.org/0000-0001-7192-7143> "Jörg Waitelonis")
 AnnotationAssertion(rdfs:label <https://orcid.org/0000-0002-1058-3102> "Fabian Neuhaus")

src/ontology/pmdco-odk.yaml

@@ -46,6 +46,10 @@ import_group:
       mirror_from: https://raw.githubusercontent.com/ISE-FIZKarlsruhe/nfdicore/refs/tags/v3.0.4/nfdicore-base.owl
       module_type: slme
       module_type_slme: SUBSET
+    - id: time
+      mirror_from: https://raw.githubusercontent.com/w3c/sdw/gh-pages/time/rdf/time.ttl
+      module_type: slme
+      module_type_slme: SUBSET
 
 components:
   products: