Automated dependency upgrades (#408)

* update dependencies for ubuntu-latest/py3.10

* update dependencies for ubuntu-latest/py3.11

* update dependencies for ubuntu-latest/py3.9

---------

Co-authored-by: github-actions <[email protected]>

Author: tschaume

requirements/ubuntu-latest_py3.10.txt

@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --output-file=./requirements/ubuntu-latest_py3.10.txt pyproject.toml
+#    pip-compile --output-file=requirements/ubuntu-latest_py3.10.txt pyproject.toml
 #
 aiofiles==22.1.0
     # via ypy-websocket
@@ -12,7 +12,7 @@ aiosqlite==0.20.0
     # via ypy-websocket
 annotated-types==0.7.0
     # via pydantic
-anyio==4.4.0
+anyio==4.5.0
     # via jupyter-server
 argon2-cffi==23.1.0
     # via
@@ -39,17 +39,17 @@ bleach==6.1.0
     # via nbconvert
 blinker==1.8.2
     # via flask
-boto3==1.35.11
+boto3==1.35.23
     # via maggma
-botocore==1.35.11
+botocore==1.35.23
     # via
     #   boto3
     #   s3transfer
 cachelib==0.9.0
     # via flask-caching
 certifi==2024.8.30
     # via requests
-cffi==1.17.0
+cffi==1.17.1
     # via
     #   argon2-cffi-bindings
     #   cryptography
@@ -68,13 +68,13 @@ crystaltoolkit-extension==0.6.0
     # via crystal_toolkit (pyproject.toml)
 cycler==0.12.1
     # via matplotlib
-dash==2.18.0
+dash==2.18.1
     # via crystal_toolkit (pyproject.toml)
 dash-core-components==2.0.0
     # via dash
 dash-html-components==2.0.0
     # via dash
-dash-mp-components==0.4.45
+dash-mp-components==0.4.46
     # via crystal_toolkit (pyproject.toml)
 dash-table==5.0.0
     # via dash
@@ -88,7 +88,7 @@ dnspython==2.6.1
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.2rc6
+emmet-core==0.84.2rc10
     # via mp-api
 entrypoints==0.4
     # via jupyter-client
@@ -112,14 +112,14 @@ fqdn==1.5.1
     # via jsonschema
 frozendict==2.4.4
     # via crystal_toolkit (pyproject.toml)
-idna==3.8
+idna==3.10
     # via
     #   anyio
     #   jsonschema
     #   requests
 imageio==2.35.1
     # via scikit-image
-importlib-metadata==8.4.0
+importlib-metadata==8.5.0
     # via dash
 ipykernel==6.29.5
     # via
@@ -195,7 +195,7 @@ jupyter-server==2.14.2
     #   jupyterlab
     #   jupyterlab-server
     #   notebook-shim
-jupyter-server-fileid==0.9.2
+jupyter-server-fileid==0.9.3
     # via jupyter-server-ydoc
 jupyter-server-terminals==0.5.3
     # via jupyter-server
@@ -232,19 +232,19 @@ matplotlib-inline==0.1.7
     #   ipython
 mistune==3.0.2
     # via nbconvert
-mongomock==4.1.2
+mongomock==4.2.0.post1
     # via maggma
 monty==2024.7.30
     # via
     #   emmet-core
     #   maggma
     #   mp-api
     #   pymatgen
-mp-api==0.42.1
+mp-api==0.42.2
     # via crystal_toolkit (pyproject.toml)
 mpmath==1.3.0
     # via sympy
-msgpack==1.0.8
+msgpack==1.1.0
     # via
     #   maggma
     #   mp-api
@@ -318,7 +318,7 @@ pandas==2.2.2
     #   pymatgen
 pandocfilters==1.5.1
     # via nbconvert
-paramiko==3.4.1
+paramiko==3.5.0
     # via sshtunnel
 parso==0.8.4
     # via jedi
@@ -329,9 +329,9 @@ pillow==10.4.0
     #   imageio
     #   matplotlib
     #   scikit-image
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via jupyter-core
-plotly==5.24.0
+plotly==5.24.1
     # via
     #   dash
     #   pymatgen
@@ -355,14 +355,14 @@ pybtex==0.24.0
     #   pymatgen
 pycparser==2.22
     # via cffi
-pydantic==2.8.2
+pydantic==2.9.2
     # via
     #   emmet-core
     #   maggma
     #   pydantic-settings
-pydantic-core==2.20.1
+pydantic-core==2.23.4
     # via pydantic
-pydantic-settings==2.4.0
+pydantic-settings==2.5.2
     # via
     #   crystal_toolkit (pyproject.toml)
     #   emmet-core
@@ -373,12 +373,12 @@ pygments==2.18.0
     # via
     #   ipython
     #   nbconvert
-pymatgen==2024.8.9
+pymatgen==2024.9.17.1
     # via
     #   crystal_toolkit (pyproject.toml)
     #   emmet-core
     #   mp-api
-pymongo==4.8.0
+pymongo==4.9.1
     # via maggma
 pynacl==1.5.0
     # via paramiko
@@ -396,8 +396,10 @@ python-dotenv==1.0.1
     # via pydantic-settings
 python-json-logger==2.0.7
     # via jupyter-events
-pytz==2024.1
-    # via pandas
+pytz==2024.2
+    # via
+    #   mongomock
+    #   pandas
 pyyaml==6.0.2
     # via
     #   jupyter-events
@@ -444,7 +446,7 @@ s3transfer==0.10.2
     # via boto3
 scikit-image==0.24.0
     # via crystal_toolkit (pyproject.toml)
-scikit-learn==1.5.1
+scikit-learn==1.5.2
     # via crystal_toolkit (pyproject.toml)
 scipy==1.14.1
     # via
@@ -479,7 +481,7 @@ sshtunnel==0.4.0
     # via maggma
 stack-data==0.6.3
     # via ipython
-sympy==1.13.2
+sympy==1.13.3
     # via pymatgen
 tabulate==0.9.0
     # via pymatgen
@@ -524,7 +526,7 @@ traitlets==5.14.3
     #   nbconvert
     #   nbformat
     #   notebook
-types-python-dateutil==2.9.0.20240821
+types-python-dateutil==2.9.0.20240906
     # via arrow
 typing-extensions==4.12.2
     # via
@@ -543,7 +545,7 @@ uncertainties==3.2.2
     # via pymatgen
 uri-template==1.3.0
     # via jsonschema
-urllib3==2.2.2
+urllib3==2.2.3
     # via
     #   botocore
     #   requests
@@ -571,7 +573,7 @@ y-py==0.6.2
     #   ypy-websocket
 ypy-websocket==0.8.4
     # via jupyter-server-ydoc
-zipp==3.20.1
+zipp==3.20.2
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file: