Automated dependency upgrades (#425)

* update dependencies for ubuntu-latest/py3.10

* update dependencies for ubuntu-latest/py3.11

* update dependencies for ubuntu-latest/py3.9

---------

Co-authored-by: github-actions <[email protected]>

Author: tschaume

requirements/ubuntu-latest_py3.10.txt

@@ -12,7 +12,7 @@ aiosqlite==0.20.0
     # via ypy-websocket
 annotated-types==0.7.0
     # via pydantic
-anyio==4.5.0
+anyio==4.6.2.post1
     # via jupyter-server
 argon2-cffi==23.1.0
     # via
@@ -39,56 +39,56 @@ bleach==6.1.0
     # via nbconvert
 blinker==1.8.2
     # via flask
-boto3==1.35.23
+boto3==1.35.46
     # via maggma
-botocore==1.35.23
+botocore==1.35.46
     # via
     #   boto3
     #   s3transfer
 cachelib==0.9.0
     # via flask-caching
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
 cffi==1.17.1
     # via
     #   argon2-cffi-bindings
     #   cryptography
     #   pynacl
-charset-normalizer==3.3.2
+charset-normalizer==3.4.0
     # via requests
 click==8.1.7
     # via flask
 comm==0.2.2
     # via ipykernel
 contourpy==1.3.0
     # via matplotlib
-cryptography==43.0.1
+cryptography==43.0.3
     # via paramiko
 crystaltoolkit-extension==0.6.0
     # via crystal_toolkit (pyproject.toml)
 cycler==0.12.1
     # via matplotlib
-dash==2.15.0
+dash==2.18.1
     # via crystal_toolkit (pyproject.toml)
 dash-core-components==2.0.0
     # via dash
 dash-html-components==2.0.0
     # via dash
-dash-mp-components==0.4.46
+dash-mp-components==0.4.47
     # via crystal_toolkit (pyproject.toml)
 dash-table==5.0.0
     # via dash
-debugpy==1.8.5
+debugpy==1.8.7
     # via ipykernel
 decorator==5.1.1
     # via ipython
 defusedxml==0.7.1
     # via nbconvert
-dnspython==2.6.1
+dnspython==2.7.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.2rc10
+emmet-core==0.84.3rc3
     # via mp-api
 entrypoints==0.4
     # via jupyter-client
@@ -106,26 +106,26 @@ flask==3.0.3
     #   flask-caching
 flask-caching==2.3.0
     # via crystal_toolkit (pyproject.toml)
-fonttools==4.53.1
+fonttools==4.54.1
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
-frozendict==2.4.4
+frozendict==2.4.6
     # via crystal_toolkit (pyproject.toml)
-idna==3.7
+idna==3.10
     # via
     #   anyio
     #   jsonschema
     #   requests
-imageio==2.35.1
+imageio==2.36.0
     # via scikit-image
 importlib-metadata==8.5.0
     # via dash
 ipykernel==6.29.5
     # via
     #   nbclassic
     #   notebook
-ipython==8.27.0
+ipython==8.28.0
     # via
     #   ipykernel
     #   jupyterlab
@@ -167,7 +167,7 @@ jsonschema[format-nongpl]==4.23.0
     #   jupyterlab-server
     #   maggma
     #   nbformat
-jsonschema-specifications==2023.12.1
+jsonschema-specifications==2024.10.1
     # via jsonschema
 jupyter-client==7.4.9
     # via
@@ -189,7 +189,7 @@ jupyter-events==0.10.0
     # via
     #   jupyter-server
     #   jupyter-server-fileid
-jupyter-server==2.11.2
+jupyter-server==2.14.2
     # via
     #   jupyter-server-fileid
     #   jupyterlab
@@ -217,9 +217,9 @@ latexcodec==3.0.0
     # via pybtex
 lazy-loader==0.4
     # via scikit-image
-maggma==0.69.3
+maggma==0.70.0
     # via mp-api
-markupsafe==2.1.5
+markupsafe==3.0.2
     # via
     #   jinja2
     #   nbconvert
@@ -234,7 +234,7 @@ mistune==3.0.2
     # via nbconvert
 mongomock==4.2.0.post1
     # via maggma
-monty==2024.7.30
+monty==2024.10.21
     # via
     #   emmet-core
     #   maggma
@@ -271,7 +271,7 @@ nest-asyncio==1.6.0
     #   jupyter-client
     #   nbclassic
     #   notebook
-networkx==3.3
+networkx==3.4.2
     # via
     #   pymatgen
     #   scikit-image
@@ -286,6 +286,7 @@ numpy==1.26.4
     #   imageio
     #   maggma
     #   matplotlib
+    #   monty
     #   pandas
     #   pymatgen
     #   scikit-image
@@ -294,7 +295,7 @@ numpy==1.26.4
     #   shapely
     #   spglib
     #   tifffile
-orjson==3.10.7
+orjson==3.10.10
     # via maggma
 overrides==7.7.0
     # via jupyter-server
@@ -312,7 +313,7 @@ packaging==24.1
     #   scikit-image
 palettable==3.3.3
     # via pymatgen
-pandas==2.2.2
+pandas==2.2.3
     # via
     #   maggma
     #   pymatgen
@@ -324,7 +325,7 @@ parso==0.8.4
     # via jedi
 pexpect==4.9.0
     # via ipython
-pillow==10.3.0
+pillow==11.0.0
     # via
     #   imageio
     #   matplotlib
@@ -335,13 +336,13 @@ plotly==5.24.1
     # via
     #   dash
     #   pymatgen
-prometheus-client==0.20.0
+prometheus-client==0.21.0
     # via
     #   jupyter-server
     #   notebook
-prompt-toolkit==3.0.47
+prompt-toolkit==3.0.48
     # via ipython
-psutil==6.0.0
+psutil==6.1.0
     # via ipykernel
 ptyprocess==0.7.0
     # via
@@ -362,7 +363,7 @@ pydantic==2.9.2
     #   pydantic-settings
 pydantic-core==2.23.4
     # via pydantic
-pydantic-settings==2.5.2
+pydantic-settings==2.6.0
     # via
     #   crystal_toolkit (pyproject.toml)
     #   emmet-core
@@ -373,16 +374,16 @@ pygments==2.18.0
     # via
     #   ipython
     #   nbconvert
-pymatgen==2024.2.20
+pymatgen==2024.10.22
     # via
     #   crystal_toolkit (pyproject.toml)
     #   emmet-core
     #   mp-api
-pymongo==4.6.3
+pymongo==4.10.1
     # via maggma
 pynacl==1.5.0
     # via paramiko
-pyparsing==3.1.4
+pyparsing==3.2.0
     # via matplotlib
 python-dateutil==2.9.0.post0
     # via
@@ -416,7 +417,7 @@ referencing==0.35.1
     #   jsonschema
     #   jsonschema-specifications
     #   jupyter-events
-requests==2.32.2
+requests==2.32.3
     # via
     #   dash
     #   jupyterlab-server
@@ -439,14 +440,15 @@ rpds-py==0.20.0
 ruamel-yaml==0.18.6
     # via
     #   maggma
+    #   monty
     #   pymatgen
-ruamel-yaml-clib==0.2.8
+ruamel-yaml-clib==0.2.12
     # via ruamel-yaml
-s3transfer==0.10.2
+s3transfer==0.10.3
     # via boto3
 scikit-image==0.24.0
     # via crystal_toolkit (pyproject.toml)
-scikit-learn==1.5.0
+scikit-learn==1.5.2
     # via crystal_toolkit (pyproject.toml)
 scipy==1.14.1
     # via
@@ -469,7 +471,7 @@ six==1.16.0
     #   python-dateutil
     #   retrying
     #   rfc3339-validator
-smart-open==7.0.4
+smart-open==7.0.5
     # via mp-api
 sniffio==1.3.1
     # via anyio
@@ -494,11 +496,11 @@ terminado==0.18.1
     #   notebook
 threadpoolctl==3.5.0
     # via scikit-learn
-tifffile==2024.8.30
+tifffile==2024.9.20
     # via scikit-image
 tinycss2==1.3.0
     # via nbconvert
-tomli==2.0.1
+tomli==2.0.2
     # via jupyterlab
 tornado==6.4.1
     # via
@@ -508,7 +510,7 @@ tornado==6.4.1
     #   jupyterlab
     #   notebook
     #   terminado
-tqdm==4.66.3
+tqdm==4.66.5
     # via
     #   maggma
     #   pymatgen
@@ -526,7 +528,7 @@ traitlets==5.14.3
     #   nbconvert
     #   nbformat
     #   notebook
-types-python-dateutil==2.9.0.20240906
+types-python-dateutil==2.9.0.20241003
     # via arrow
 typing-extensions==4.12.2
     # via
@@ -539,7 +541,7 @@ typing-extensions==4.12.2
     #   pydantic
     #   pydantic-core
     #   pydash
-tzdata==2024.1
+tzdata==2024.2
     # via pandas
 uncertainties==3.2.2
     # via pymatgen
@@ -561,7 +563,7 @@ webencodings==0.5.1
     #   tinycss2
 websocket-client==1.8.0
     # via jupyter-server
-werkzeug==3.0.3
+werkzeug==3.0.4
     # via
     #   dash
     #   flask
@@ -573,7 +575,7 @@ y-py==0.6.2
     #   ypy-websocket
 ypy-websocket==0.8.4
     # via jupyter-server-ydoc
-zipp==3.19.1
+zipp==3.20.2
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file: