Merge pull request #404 from materialsvirtuallab/pre-commit-ci-update-config

pre-commit autoupdate

Author: shyuep

.pre-commit-config.yaml

@@ -8,46 +8,46 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.6
+    rev: v0.9.9
     hooks:
       - id: ruff
         args: [ --fix, --unsafe-fixes ]
       - id: ruff-format
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-yaml
       - id: end-of-file-fixer
       - id: trailing-whitespace
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.1
+    rev: v1.15.0
     hooks:
       - id: mypy
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.3.0
+    rev: v2.4.1
     hooks:
       - id: codespell
         stages: [ pre-commit, commit-msg ]
         exclude_types: [ html ]
         additional_dependencies: [ tomli ] # needed to read pyproject.toml below py3.11
 
   - repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.2
+    rev: v0.16.6
     hooks:
       - id: cython-lint
         args: [ --no-pycodestyle ]
       - id: double-quote-cython-strings
 
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: 1.16.0
+    rev: 1.19.1
     hooks:
       - id: blacken-docs
 
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.41.0
+    rev: v0.44.0
     hooks:
       - id: markdownlint
         # MD013: line too long
@@ -58,12 +58,12 @@ repos:
         args: [ --disable, MD013, MD024, MD025, MD033, MD041, "--" ]
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
+    rev: 0.8.1
     hooks:
       - id: nbstripout
         args: [ --drop-empty-cells, --keep-output ]
 
   - repo: https://github.com/RobertCraigie/pyright-python
-    rev: v1.1.369
+    rev: v1.1.396
     hooks:
       - id: pyright

examples/neb_idpp_solver.ipynb

@@ -18,8 +18,7 @@
     "init_struct = Structure.from_file(os.path.join(dirname, \"CONTCAR-0\"), False)\n",
     "final_struct = Structure.from_file(os.path.join(dirname, \"CONTCAR-1\"), False)\n",
     "\n",
-    "obj = IDPPSolver.from_endpoints(endpoints=[init_struct, final_struct], nimages=3,\n",
-    "                                sort_tol=1.0)\n",
+    "obj = IDPPSolver.from_endpoints(endpoints=[init_struct, final_struct], nimages=3, sort_tol=1.0)\n",
     "new_path = obj.run(maxiter=5000, tol=1e-5, gtol=1e-3, species=[\"Li\"])"
    ]
   }