Merge pull request ITHACA-FV#612 from giovastabile/update_submodules

ENH: updated to OF2506

Author: giovastabile

.compileOF2506.sh

@@ -0,0 +1,4 @@
+#!/bin/bash
+docker pull ithacafv/openfoam2506-muq2-pytorch
+docker run -ti -d --name foam2506 -v "${PWD}":/home/ofuser/app:rw ithacafv/openfoam2506-muq2-pytorch /bin/bash
+docker exec foam2506 /bin/bash -c "source /usr/lib/openfoam/openfoam2506/etc/bashrc; cd /home/ofuser/app; git config --global --add safe.directory /home/ofuser/app; source etc/bashrc; git submodule update --init; ./Allwclean; ./Allwmake -taumq"

.github/workflows/of2512.yml

@@ -0,0 +1,27 @@
+name: OF2506
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    
+    strategy:
+      matrix:
+        include:
+          - name: "OpenFOAM 2506"
+            install: "cd ."
+            compile: ./.compileOF2506.sh
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v1
+    - name: install OF
+      run: ${{ matrix.install}}
+    - name: make
+      run: ${{ matrix.compile}}

README.md

@@ -13,6 +13,7 @@
 <a href="https://www.codacy.com/gh/ithaca-fv/ITHACA-FV/dashboard?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=ithaca-fv/ITHACA-FV&amp;utm_campaign=Badge_Grade">
 <img alt="Codacy Badge" src="https://app.codacy.com/project/badge/Grade/f51e1de0fd7c42a6a0be13889cbd4b0e">
 </a>
+</p>
 
 ### 0. Introduction
 **ITHACA-FV** is an implementation in **OpenFOAM** of several reduced order modelling techniques. **ITHACA-FV** is designed for [**OpenFOAM v2412**](https://www.openfoam.com/news/main-news/openfoam-v2412/) but it can be easily adapted also to other versions of OpenFOAM.

dockerfiles/OF2412/Makefile

@@ -3,7 +3,7 @@ clean:
 	rm -f hello
 
 build:
-	docker build --build-arg myuser=$(shell whoami) --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t ithacafv/openfoam2412 -f ./Dockerfile .
+	docker build --build-arg myuser=$(shell whoami) --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t ithacafv/openfoam2506-muq2-pytorch -f ./Dockerfile .
 
 run: build
 	xhost +"local:docker" && \

dockerfiles/OF2506/Dockerfile

@@ -0,0 +1,31 @@
+# Start from the ubuntu Openfoam 2106 image
+FROM opencfd/openfoam-dev:2506
+USER root
+ARG PYTHON_VERSION=3.7
+ENV PATH="/root/miniconda3/bin:${PATH}"
+
+RUN rm /etc/apt/sources.list.d/openfoam.list && \
+    cp /etc/apt/sources.list /etc/apt/sources.list.backup && \
+    grep -v -e "openfoam" /etc/apt/sources.list.backup > /etc/apt/sources.list && \
+    echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections && \
+    apt-get update && \
+    apt-get install -yy -q pwgen npm nodejs cmake git wget bzip2 unzip && \
+    apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# Anaconda installing
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
+bash Miniconda3-latest-Linux-x86_64.sh -b && \
+rm Miniconda3-latest-Linux-x86_64.sh && \
+. /root/miniconda3/etc/profile.d/conda.sh && \  
+export PATH=/root/miniconda3/bin:$PATH && \
+wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.7.1%2Bcpu.zip && \
+unzip libtorch-cxx11-abi-shared-with-deps-2.7.1+cpu.zip && \
+rm libtorch-cxx11-abi-shared-with-deps-2.7.1+cpu.zip && \
+conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
+conda tos accept --override-channels --channel  https://repo.anaconda.com/pkgs/r && \
+conda install -y -c conda-forge muq cmake && \
+conda clean -y --all
+ENV TORCH_LIBRARIES=/libtorch
+ENV MUQ_LIBRARIES=/root/miniconda3
+RUN echo 'source /usr/lib/openfoam/openfoam2412/etc/bashrc' >> ~/.bashrc 
+

dockerfiles/OF2506/Makefile

@@ -0,0 +1,16 @@
+ME=$(shell whoami)
+clean:
+	rm -f hello
+
+build:
+	docker build --build-arg myuser=$(shell whoami) --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t ithacafv/openfoam2506-muq2-pytorch -f ./Dockerfile .
+
+run: build
+	xhost +"local:docker" && \
+	docker run -ti --rm \
+        -v "${HOME}:/home/${ME}" \
+		-e DISPLAY=${DISPLAY} \
+        --security-opt seccomp=unconfined \
+		ubuntu-apc
+
+