Merge branch 'PyDMD:master' into bopdmd-uq-tools

Author: sichinaga

LICENSE.rst

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2017-2023 PyDMD contributors
+Copyright (c) 2017-2024 PyDMD contributors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README.md

@@ -7,20 +7,20 @@
     <a href="http://pydmd.github.io/PyDMD" target="_blank">
         <img alt="Docs" src="https://img.shields.io/badge/PyDMD-docs-blue?style=for-the-badge"/>
     </a>
-    <a href="https://doi.org/10.21105/joss.00530" target="_blank">
-        <img alt="JOSS DOI" src="https://img.shields.io/badge/JOSS-10.21105/joss.00530-blue?style=for-the-badge">
+    <a href="https://pypi.org/project/pydmd/" target="_blank">
+        <img alt="PyPI version" src="https://img.shields.io/pypi/v/pydmd?style=for-the-badge">
+    </a>
+    <a href="#dependencies-and-installation" target="_blank">
+        <img alt="Python versions" src="https://img.shields.io/pypi/pyversions/PyDMD?style=for-the-badge">
     </a>
     <a href="https://github.com/PyDMD/PyDMD/blob/master/LICENSE" target="_blank">
         <img alt="Software License" src="https://img.shields.io/badge/license-MIT-brightgreen.svg?style=for-the-badge">
     </a>
-    <a href="https://pypi.org/project/pydmd/"  target="_blank">
-        <img alt="PyPI version" src="https://img.shields.io/pypi/v/pydmd?style=for-the-badge">
-    </a>
     <br>
     <a href="https://github.com/PyDMD/PyDMD/actions/workflows/deploy_after_push.yml" target="_blank">
         <img alt="CI Status" src="https://img.shields.io/github/actions/workflow/status/PyDMD/PyDMD/deploy_after_push.yml?style=for-the-badge">
     </a>
-    <a href="https://www.codacy.com/gh/PyDMD/PyDMD/dashboard?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=PyDMD/PyDMD&amp;utm_campaign=Badge_Coverage" target="_blank">
+    <a href="https://app.codacy.com/gh/PyDMD/PyDMD/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_coverage" target="_blank">
       <img src="https://img.shields.io/codacy/coverage/3d8b278a835e402c86cac9625bb4912f/master?style=for-the-badge"/>
     </a>
     <a href="https://app.codacy.com/gh/PyDMD/PyDMD/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade" target="_blank">
@@ -31,12 +31,17 @@
     </a>
     <br>
     <a href="#developers-and-contributors">
-      <img alt="All Contributors" src="https://img.shields.io/badge/all_contributors-25-orange.svg?style=for-the-badge"/>
+      <img alt="All Contributors" src="https://img.shields.io/github/contributors-anon/PyDMD/PyDMD?style=for-the-badge"/>
     </a>
     <a href="#stargazers">
       <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/PyDMD/PyDMD?style=for-the-badge">
     </a>
-
+    <a href="#dependencies-and-installation" target="_blank">
+        <img alt="PyPI downloads per month" src="https://img.shields.io/pypi/dm/PyDMD?label=pypi&logo=python&logoColor=yellow&style=for-the-badge">
+    </a>
+    <a href="https://doi.org/10.21105/joss.00530" target="_blank">
+        <img alt="JOSS DOI" src="https://img.shields.io/badge/JOSS-10.21105/joss.00530-blue?style=for-the-badge">
+    </a>
 </p>
 
 ## Table of contents
@@ -48,6 +53,7 @@
 * [References](#references)
 * [Developers and contributors](#developers-and-contributors)
 * [Funding](#funding)
+* [Affiliations](#affiliations)
 
 ## Description
 
@@ -202,3 +208,10 @@ Beyond this, PyDMD has also been supported by some dedicated projects that have
 <p align="center">
     <img src="readme/logos_funding.png" width="800" />
 </p>
+
+## Affiliations
+<p align="center">
+    <a href="https://numfocus.org/sponsored-projects/affiliated-projects">
+        <img src="readme/numfocus-affiliated-project.png" width="300" />
+    </a>
+</p>

pydmd/bopdmd.py

@@ -1004,6 +1004,10 @@ def svd_rank(self):
         """
         return self._svd_rank
 
+    @svd_rank.setter
+    def svd_rank(self, value):
+        self._svd_rank = value
+
     @property
     def compute_A(self):
         """
@@ -1034,6 +1038,14 @@ def init_alpha(self):
             raise RuntimeError(msg)
         return self._init_alpha
 
+    @init_alpha.setter
+    def init_alpha(self, value):
+        """Set a new initial eigenvalue guess.
+
+        :param value: The new eigenvalue guess.
+        """
+        self._init_alpha = value
+
     @property
     def proj_basis(self):
         """
@@ -1048,6 +1060,14 @@ def proj_basis(self):
             raise RuntimeError(msg)
         return self._proj_basis
 
+    @proj_basis.setter
+    def proj_basis(self, new_proj_basis):
+        """Set a new projection basis.
+
+        :param new_proj_basis: The new projection basis to assign.
+        """
+        self._proj_basis = new_proj_basis
+
     @property
     def num_trials(self):
         """