Merge pull request #8 from mathis-group/fix_paper_search

colemathis · web-flow · commit ccbe6ee6b646 · 2025-12-11T12:39:42.000-07:00
Fix paper search
diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db
diff --git a/_data/projects.yaml b/_data/projects.yaml
@@ -6,7 +6,7 @@
 - title: Life Detection from First Principles.
   group: featured
   image: images/life-detection.jpg
-  description: A key challenge in astrobiology is that we don't have widely accepted definitions of life. We take a pragmatic approach to life detection, while still engaging with the underlying  challenges.
+  description: A key challenge in astrobiology is that we don't have widely accepted definitions of life. We take a pragmatic approach to life detection, while still engaging with this underlying challenge.
 
 - title: Assembly Theory for Complex Systems.
   group: featured
diff --git a/_layouts/member.html b/_layouts/member.html
@@ -29,12 +29,12 @@
 %}
 
 {% capture search -%}
-  research/?search={% for alias in aliases %}"{{ alias }}" {% endfor %}
+  publications/?search={% for alias in aliases %}"{{ alias }}" {% endfor %}
 {%- endcapture %}
 
 <p class="center">
   <a href="{{ search | relative_url }}">
-    Search for {{ page.name | default: page.title }}'s papers on the Research page
+    Search for {{ page.name | default: page.title }}'s papers on the Publication page
   </a>
 </p>
 
diff --git a/_members/alexandre-champagne-ruel.md b/_members/alexandre-champagne-ruel.md
@@ -2,8 +2,13 @@
 name: Alexandre Champagne-Ruel
 image: images/AChampagneRuel.jpg
 description: NASA Postdoctoral Fellow
-role: phd
-group: alum
+role: postdoc
+aliases:
+  - A. Champagne-Ruel
+  - A Champagne-Ruel
+  - Alexandre Champagne-Ruel
+  - Champagne-Ruel A.
+group: alumn
 home-page: https://alexandrechampagne.io
 ---
 
diff --git a/_members/cole-mathis.md b/_members/cole-mathis.md
@@ -1,11 +1,13 @@
 ---
 name: Cole Mathis
-image: images/Mathis_Profile_2023_small_crop.jpg
+image: images/Cole-Mathis.jpg
 role: pi
 affiliation: Arizona State University
 aliases:
   - C. Mathis
   - C Mathis
+  - Cole Mathis
+  - Mathis C.
 links:
   home-page: https://colemathis.github.io/
   orcid: 0000-0001-8424-9169
diff --git a/_members/olivia-smith.md b/_members/olivia-smith.md
@@ -1,7 +1,15 @@
 ---
 name: Olivia Smith
 image: images/OSmith2024.jpg
-description: PhD Student in School of Complex Adaptive Systems 
+description: PhD Student in School of Complex Adaptive Systems
+aliases:
+  - OM Smith
+  - O.M. Smith
+  - Olivia Smith
+  - Olivia M. Smith
+  - Smith O.
+  - Smith OM.
+  - Smith O.M.
 role: phd
 group: alum
 ---
diff --git a/images/Cole-Mathis.jpg b/images/Cole-Mathis.jpg
diff --git a/index.md b/index.md
@@ -10,7 +10,7 @@ The Mathis Group is broadly interested in the origin and detection of life. Our
 
 {%
   include button.html
-  link="research"
+  link="publications"
   text="See our publications"
   icon="fa-solid fa-arrow-right"
   flip=true
diff --git a/projects/_index.md b/projects/_index.md
diff --git a/publications/index.md b/publications/index.md
@@ -0,0 +1,28 @@
+---
+title: Publications
+nav:
+  order: 2
+  tooltip: Papers, Software, Datasets.
+---
+
+# Highlighted Publications
+
+{% include citation.html lookup="Self-organization in computation and chemistry: Return to AlChemy" style="rich" %}
+
+{% include citation.html lookup="Life detection in a universe of false positives" style="rich" %}
+
+{% include citation.html lookup="Identifying molecules as biosignatures with assembly theory and mass spectrometry" style="rich" %}
+
+{% include section.html %}
+
+# Software
+
+See our [GitHub profile](https://github.com/mathis-group) for access to software we've developed and scripts to reproduce our work. 
+
+# All Publications
+
+{% include search-box.html %}
+
+{% include search-info.html %}
+
+{% include list.html data="citations" component="citation" style="rich" %}
diff --git a/research/index.md b/research/index.md
@@ -23,11 +23,3 @@ nav:
 {% include citation.html lookup="Identifying molecules as biosignatures with assembly theory and mass spectrometry" style="rich" %}
 
 {% include section.html %}
-
-# All Publications
-
-{% include search-box.html %}
-
-{% include search-info.html %}
-
-{% include list.html data="citations" component="citation" style="rich" %}
diff --git a/team/index.md b/team/index.md
@@ -16,9 +16,6 @@ nav:
 
 # Interested in Joining?
 
-### Postdoctoral Scholars:
-We're hiring! Details and application portal are available here: [apply.interfolio.com](https://apply.interfolio.com/175255) 
-
 ### Graduate Students:
 We do not currently have funding lines to support new graduate students. Students interested in joining us are encouraged to apply to the PhD program in the School of Complex Adaptive Systems, and contact Prof. Cole Mathis about applying for independent funding through the [NSF's Graduate Research Fellowship Program](https://www.nsf.gov/funding/opportunities/grfp-nsf-graduate-research-fellowship-program) or [NASA Future Investigators in NASA Earth and Space Science Technology](https://science.nasa.gov/earth-science/early-career-opportunities/) programs. 
 
