diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 4d70109..b06e871 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index b4d05e9..e4ede52 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -13,6 +13,60 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.48550/arXiv.2507.00106 + title: Challenge-Based Funding to Spark Origins Breakthroughs + authors: + - Cole Mathis + - Harrison B. Smith + publisher: arXiv + date: '2025-01-01' + link: https://doi.org/g96hn6 + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.48550/arXiv.2507.00335 + title: Historical Contingencies Steer the Topology of Randomly Assembled Graphs + authors: + - Cole Mathis + - Harrison B. Smith + publisher: arXiv + date: '2025-01-01' + link: https://doi.org/g96hn7 + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.48550/arXiv.2507.08852 + title: Open, Reproducible Calculation of Assembly Indices + authors: + - Devansh Vimal + - Garrett Parzych + - Olivia M. Smith + - Devendra Parkar + - Sean Bergen + - Joshua J. Daymude + - Cole Mathis + publisher: arXiv + date: '2025-01-01' + link: https://doi.org/g96hn8 + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.48550/arXiv.2505.01056 + title: The Emergence of Chirality from Metabolism + authors: + - John F. Malloy + - Camerian Millsaps + - Kamesh Narasimhan + - Louie Slocombe + - Cole Mathis + - Leroy Cronin + - Sara Imari Walker + publisher: arXiv + date: '2025-01-01' + link: https://doi.org/g96hpb + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1063/5.0207358 title: 'Self-organization in computation and chemistry: Return to AlChemy' authors: @@ -27,6 +81,34 @@ plugin: sources.py file: sources.yaml image: https://aipp.silverchair-cdn.com/aipp/content_public/journal/cha/34/9/10.1063_5.0207358/1/093142_1_5.0207358.figures.online.f1.jpeg?Expires=1762991471&Signature=u~X23oXOqm4xex0d2Ri8IwmRpssbxpsZ~BwmPvjBheyyms96DretPar7v9qJw3InNDAzOm6XUge0p3oqLb87D4CtF90-11MLVcJwv3~xH8ynUyupiEYuGBfWE7m6OElwM6VpEva8EOp99d6hWEl2-dzFxm~VdxGxgjhEFjOfrkjunLDEJjobuJqHCRBNPb-UwnxKCVoZ2~1vrZ3JVxY1DDp5KuMhvTEOdZyaYbnIRBbTagd8~QFZMpvWlGaGzrleI6wvVx8WkVCs6u89RzCIrN6ity-4Lvg2UfnLH0ZhyYtZQqdObPcpM~XCrdrrDyoiHdtAxAxR6Fy5TizM4mPATQ__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA +- id: doi:10.48550/arXiv.2406.06826 + title: Experimental Measurement of Assembly Indices are Required to Determine The + Threshold for Life + authors: + - Sara I. Walker + - Cole Mathis + - Stuart Marshall + - Leroy Cronin + publisher: arXiv + date: '2024-01-01' + link: https://doi.org/g96hpc + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1098/rsif.2024.0367 + title: Experimentally measured assembly indices are required to determine the threshold + for life + authors: + - Sara I. Walker + - Cole Mathis + - Stuart Marshall + - Leroy Cronin + publisher: Journal of The Royal Society Interface + date: '2024-11-01' + link: https://doi.org/g96hpf + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1021/acscentsci.4c00120 title: Investigating and Quantifying Molecular Complexity Using Assembly Theory and Spectroscopy @@ -49,6 +131,40 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.48550/arXiv.2408.12137 + title: 'Self-Organization in Computation & Chemistry: Return to AlChemy' + authors: + - Cole Mathis + - Devansh Patel + - Westley Weimer + - Stephanie Forrest + publisher: arXiv + date: '2024-01-01' + link: https://doi.org/g96hpg + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.48550/arXiv.2302.13753 + title: Determining Molecular Complexity using Assembly Theory and Spectroscopy + authors: + - Michael Jirasek + - Abhishek Sharma + - Jessica R. Bame + - S. Hessam M. Mehr + - Nicola Bell + - Stuart M. Marshall + - Cole Mathis + - Alasdair Macleod + - Geoffrey J. T. Cooper + - Marcel Swart + - Rosa Mollfulleda + - Leroy Cronin + publisher: arXiv + date: '2023-01-01' + link: https://doi.org/g96hpj + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1089/ast.2023.0005 title: False Positives and the Challenge of Testing the Alien Hypothesis authors: @@ -122,6 +238,19 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.48550/arXiv.2207.00634 + title: False positives and the challenge of testing the alien hypothesis + authors: + - Searra Foote + - Pritvik Sinhadc + - Cole Mathis + - Sara Imari Walker + publisher: arXiv + date: '2022-01-01' + link: https://doi.org/g96hpk + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1016/j.matt.2021.11.030 title: Investigating the autocatalytically driven formation of Keggin-based polyoxometalate clusters @@ -136,6 +265,17 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.48550/arXiv.2205.07921 + title: The Futility of Exoplanet Biosignatures + authors: + - Harrison B. Smith + - Cole Mathis + publisher: arXiv + date: '2022-01-01' + link: https://doi.org/g96hpn + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1016/j.xcrp.2021.100685 title: Exploring the sequence space of unknown oligomers and polymers authors: @@ -217,6 +357,59 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.26434/chemrxiv.13202969.v1 + title: A Universal Sequencing System for Unknown Oligomers + authors: + - David Doran + - Emma Clarke + - Graham Keenan + - Emma Carrick + - Cole Mathis + - Leroy Cronin + publisher: American Chemical Society (ACS) + date: '2020-11-09' + link: https://doi.org/g96hpp + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.26434/chemrxiv.13476597 + title: Exploring and Mapping Chemical Space with Molecular Assembly Trees + authors: + - Yu Liu + - Cole Mathis + - stuart Marshall + - "Micha\u0142 Dariusz Bajczyk" + - Liam Wilbraham + - Leroy Cronin + publisher: American Chemical Society (ACS) + date: '2021-05-05' + link: https://doi.org/g96hpr + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.26434/chemrxiv.13227881.v1 + title: Identifying Molecules as Biosignatures with Assembly Theory and Mass Spectrometry + authors: + - stuart Marshall + - Cole Mathis + - Emma Carrick + - Graham Keenan + - Geoffrey Cooper + - Heather Graham + - Jessica Bame + - Matthew Craven + - Nicola Bell + - Piotr S. Gromski + - Marcel Swart + - Douglas G. Moore + - Sara Walker + - Leroy Cronin + publisher: American Chemical Society (ACS) + date: '2020-11-16' + link: https://doi.org/g96hps + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1126/sciadv.aau0149 title: Universal scaling across biochemical networks on Earth authors: @@ -265,6 +458,56 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.26434/chemrxiv.9598442.v1 + title: Spontaneous Formation of Autocatalytic Sets with Self-Replicating Inorganic + Metal Oxide Clusters + authors: + - Haralampos N. Miras + - Cole Mathis + - Weimin Xuan + - De-Liang Long + - Robert Pow + - Leroy Cronin + publisher: American Chemical Society (ACS) + date: '2019-08-14' + link: https://doi.org/g96hpt + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.26434/chemrxiv.6962813.v1 + title: Environmental Control Programs the Emergence of Distinct Product Ensembles + from Unconstrained Chemical Reaction Networks + authors: + - Andrew J. Surman, + - Marc Rodriguez Garcia + - Yousef Abul-Haija + - Geoffrey Cooper + - Piotr S. Gromski + - Rebecca Turk-MacLeod + - Margaret Mullin + - Cole Mathis + - Sara Walker + - Leroy Cronin + publisher: American Chemical Society (ACS) + date: '2018-08-14' + link: https://doi.org/g96hpw + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.48550/arxiv.1807.08635 + title: Individual perception dynamics in drunk games + authors: + - Alberto Antonioni + - Luis A. Martinez-Vaquero + - Cole Mathis + - Leto Peel + - Massimo Stella + publisher: arXiv + date: '2018-01-01' + link: https://doi.org/g96hpx + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml - id: doi:10.3390/life7040038 title: 'Prebiotic RNA Network Formation: A Taxonomy of Molecular Cooperation' authors: @@ -290,3 +533,17 @@ orcid: 0000-0001-8424-9169 plugin: orcid.py file: orcid.yaml +- id: doi:10.1101/212118 + title: Universal scaling across biochemical networks on Earth + authors: + - Hyunju Kim + - Harrison B. Smith + - Cole Mathis + - Jason Raymond + - Sara I. Walker + publisher: Cold Spring Harbor Laboratory + date: '2017-10-31' + link: https://doi.org/gktw74 + orcid: 0000-0001-8424-9169 + plugin: orcid.py + file: orcid.yaml