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lines changed Original file line number Diff line number Diff line change @@ -192,6 +192,15 @@ make pip
192192
193193## Build Data Sets
194194
195+ :warning : For using your own data set, the following steps are not needed. Please check the
196+ [ existing datasets] ( https://github.com/mathpluscode/ImgX-DiffSeg/blob/main/imgx_datasets/ ) for
197+ examples of using TFDS. Particularly,
198+ [ BraTS 2021] ( https://github.com/mathpluscode/ImgX-DiffSeg/blob/main/imgx_datasets/brats2021_mr/brats2021_mr_dataset_builder.py )
199+ does not require downloading.
200+
201+ :muscle : We are working on a toy example for using custom data sets without TFDS, thanks for your
202+ understanding.
203+
195204Use the following commands to (re)build all data sets. Check the [ README] ( imgx_datasets/README.md )
196205of imgx_datasets for details. Especially, manual downloading is required for the BraTS 2021 dataset.
197206
@@ -200,6 +209,15 @@ make build_dataset
200209make rebuild_dataset
201210```
202211
212+ Or build the selected data set by running one of the following commands.
213+
214+ ``` bash
215+ tfds build imgx_datasets/male_pelvic_mr
216+ tfds build imgx_datasets/amos_ct
217+ tfds build imgx_datasets/muscle_us
218+ tfds build imgx_datasets/brats2021_mr # requires downloading data manually
219+ ```
220+
203221## Experiment
204222
205223### Training and Testing
Original file line number Diff line number Diff line change @@ -302,7 +302,7 @@ def _split_generators(
302302 Returns:
303303 dict mapping split to generators.
304304 """
305- # Download data from zenodo
305+ # Manually downloaded
306306 data_dir = dl_manager .manual_dir / BRATS2021_MR_TFDS_FOLD / "BraTS2021_Training_Data"
307307 preprocessed_dir = dl_manager .manual_dir / BRATS2021_MR_TFDS_FOLD / "preprocessed"
308308 preprocessed_dir .mkdir (parents = True , exist_ok = True )
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