Merge pull request #164 from mathworks/autotrace

enable specifying folders in AutoTrace options, closes #163

Author: duncanpo

auto-instrumentation/+opentelemetry/+autoinstrument/AutoTrace.m

@@ -58,9 +58,15 @@
                 options.AdditionalFiles {mustBeText}
                 options.AutoDetectFiles (1,1) {mustBeNumericOrLogical} = true
             end
+            % check for anonymous function
+            fs = functions(startfun);
+            if fs.type == "anonymous"                  
+                error("opentelemetry:autoinstrument:AutoTrace:AnonymousFunction", ...
+                    "Anonymous functions are not supported.");
+            end
             obj.StartFunction = startfun;
             startfunname = func2str(startfun);
-            processFileInput(startfunname);   % validate startfun
+            startfunname = processFileInput(startfunname);   % validate startfun
             if options.AutoDetectFiles
                 if isdeployed
                     % matlab.codetools.requiredFilesAndProducts is not
@@ -76,15 +82,16 @@
                 end
             else
                 % only include the input file, not its dependencies
-                files = string(which(startfunname));
+                files = startfunname;
             end
             % add extra files, this is intended for files
             % matlab.codetools.requiredFilesAndProducts somehow missed
             if isfield(options, "AdditionalFiles")   
-                incfiles = string(options.AdditionalFiles);
-                for i = 1:numel(incfiles)
-                    incfiles(i) = which(incfiles(i));  % get the full path
-                    processFileInput(incfiles(i));   % validate additional file
+                incinput = string(options.AdditionalFiles);
+                incfiles = []; 
+                for i = 1:numel(incinput)
+                    % validate additional file
+                    incfiles = [incfiles; processFileOrFolderInput(incinput(i))];   %#ok<AGROW> 
                 end
                 files = union(files, incfiles);
             end
@@ -94,9 +101,11 @@
 
             % filter out excluded files
             if isfield(options, "ExcludeFiles")   
-                excfiles = string(options.ExcludeFiles);
-                for i = 1:numel(excfiles)
-                    excfiles(i) = which(excfiles(i));  % get the full path
+                excinput = string(options.ExcludeFiles);
+                excfiles = [];
+                for i = 1:numel(excinput)
+                    % validate exclude file
+                    excfiles = [excfiles; processFileOrFolderInput(excinput(i))];   %#ok<AGROW>
                 end
                 files = setdiff(files, excfiles);
             end
@@ -155,15 +164,13 @@ function handleError(obj, ME)
 end
 
 % check input file is valid
-function processFileInput(f)
+function f = processFileInput(f)
 f = string(f);   % force into a string
-if startsWith(f, '@')  % check for anonymous function
-    error("opentelemetry:autoinstrument:AutoTrace:AnonymousFunction", ...
-        replace(f, "\", "\\") + " is an anonymous function and is not supported.");
-end
 [~,~,fext] = fileparts(f);  % check file extension
 filetype = exist(f, "file");  % check file type
-if ~(filetype == 2 && ismember(fext, ["" ".m" ".mlx"])) 
+if filetype == 2 && ismember(fext, ["" ".m" ".mlx"])
+    f = string(which(f));
+else
     if exist(f, "builtin")
         error("opentelemetry:autoinstrument:AutoTrace:BuiltinFunction", ...
             replace(f, "\", "\\") + " is a builtin function and is not supported.");
@@ -172,4 +179,20 @@ function processFileInput(f)
             replace(f, "\", "\\") + " is not found or is not a valid MATLAB file with a .m or .mlx extension.");
     end
 end
+end
+
+% check input file or folder is valid
+function f = processFileOrFolderInput(f)
+f = string(f);   % force into a string
+if isfolder(f)
+    % expand the directory
+    mfileinfo = dir(fullfile(f, "*.m"));
+    mfiles = fullfile(string({mfileinfo.folder}), string({mfileinfo.name}));
+    mlxfileinfo = dir(fullfile(f, "*.mlx"));
+    mlxfiles = fullfile(string({mlxfileinfo.folder}), string({mlxfileinfo.name}));
+    f = [mfiles; mlxfiles];
+else
+    % file
+    f = processFileInput(f);
+end
 end

test/autotrace_examples/example1/best_fit_line.m renamed to test/autotrace_examples/linearfit_example/best_fit_line.m

@@ -1,5 +1,5 @@
 function yf = best_fit_line(x, y)
-% example code for testing auto instrumentation
+% Fit a straight line on input data
 
 % Copyright 2024 The MathWorks, Inc.
 

test/autotrace_examples/example1/generate_data.m renamed to test/autotrace_examples/linearfit_example/generate_data.m

@@ -1,11 +1,11 @@
 function [x, y] = generate_data(n)
-% example code for testing auto instrumentation
+% Generate random data with n data points
 
 % Copyright 2024 The MathWorks, Inc.
 
 % check input is valid
 if ~(isnumeric(n) && isscalar(n))
-    error("autotrace_examples:example1:generate_data:InvalidN", ...
+    error("autotrace_examples:linearfit_example:generate_data:InvalidN", ...
         "Input must be a numeric scalar");
 end
 

test/autotrace_examples/example1/example1.m renamed to test/autotrace_examples/linearfit_example/linearfit_example.m

@@ -1,5 +1,5 @@
-function yf = example1(n)
-% example code for testing auto instrumentation. Input n is the number of
+function yf = linearfit_example(n)
+% Example code for testing auto instrumentation. Input n is the number of
 % data points.
 
 % Copyright 2024 The MathWorks, Inc.

test/autotrace_examples/example1/example1_trycatch.m renamed to test/autotrace_examples/linearfit_example/linearfit_example_trycatch.m

@@ -1,5 +1,5 @@
-function yf = example1_trycatch(at, n)
-% example code for testing auto instrumentation. This example should not
+function yf = linearfit_example_trycatch(at, n)
+% Example code for testing auto instrumentation. This example should not
 % use beginTrace method and instead should be called directly. 
 
 % Copyright 2024 The MathWorks, Inc.

test/autotrace_examples/manual_instrumented_example/best_fit_line.m

@@ -0,0 +1,14 @@
+function yf = best_fit_line(x, y)
+% Fit a straight line on input data and manually start and end two spans.
+
+% Copyright 2024 The MathWorks, Inc.
+
+tr = opentelemetry.trace.getTracer("ManualInstrument");
+
+sp1 = startSpan(tr, "polyfit");
+coefs = polyfit(x, y, 1);
+endSpan(sp1);
+
+sp2 = startSpan(tr, "polyval");
+yf = polyval(coefs , x);
+endSpan(sp2);

test/autotrace_examples/manual_instrumented_example/generate_data.m

@@ -0,0 +1,22 @@
+function [x, y] = generate_data(n)
+% Generate random data with n data points and manually start and end a span.
+
+% Copyright 2024 The MathWorks, Inc.
+
+% check input is valid
+if ~(isnumeric(n) && isscalar(n))
+    error("autotrace_examples:linearfit_example:generate_data:InvalidN", ...
+        "Input must be a numeric scalar");
+end
+
+% generate some random data
+a = 1.5;
+b = 0.8;
+sigma = 5;
+x = 1:n;
+
+% start a span
+tr = opentelemetry.trace.getTracer("ManualInstrument");
+sp = startSpan(tr, "compute_y");
+y = a * x + b + sigma * randn(1, n);
+endSpan(sp);

test/autotrace_examples/manual_instrumented_example/manual_instrumented_example.m

@@ -0,0 +1,8 @@
+function yf = manual_instrumented_example(n)
+% Example code for testing auto and manual instrumentation together. 
+% Input n is the number of data points.
+
+% Copyright 2024 The MathWorks, Inc.
+
+[x, y] = generate_data(n);
+yf = best_fit_line(x,y);

test/autotrace_examples/subfolder_example/helpers/subfolder_helper1.m

@@ -0,0 +1,6 @@
+function x = subfolder_helper1(x)
+% example code for testing auto instrumentation, helper function
+
+% Copyright 2024 The MathWorks, Inc.
+
+x = x * 2;

test/autotrace_examples/subfolder_example/helpers/subfolder_helper2.m

@@ -0,0 +1,6 @@
+function x = subfolder_helper2(x)
+% example code for testing auto instrumentation, helper function
+
+% Copyright 2024 The MathWorks, Inc.
+
+x = x * 3;