Symbolic Toolbox Rendering Fails with MATLAB Kernel #104
Description
Summary
Version:
- jupyter_matlab_proxy: 0.15.2
- MATLAB: R2024a Update 6 (24.1.0.2689473)
- Python: 3.10.13
- Jupyter Lab: 4.3.0
Environment:
- OS: Arch Linux
- Browser: Firefox
Description:
The rendering of the symbolic toolbox fails when executing even the simplest symbolic expression. The expected output is not produced, and an error message is displayed instead.
Steps to Reproduce:
- Launch Jupyter Lab.
- Create a new MATLAB notebook.
- Execute the following code:
sym x x
Expected Behavior:
The expected behavior is that the symbolic variable x should be displayed without any errors.
Actual Behavior:
The following error message is displayed instead:
MATLAB Kernel Error:
Error using <a href="matlab:matlab.lang.internal.introspective.errorDocCallback('matlab.internal.cef.webwindow', '/opt/matlab/toolbox/matlab/cefclient/+matlab/+internal/+cef/webwindow.m', 403)" style="font-weight:bold">matlab.internal.cef.webwindow</a> (<a href="matlab: opentoline('/opt/matlab/toolbox/matlab/cefclient/+matlab/+internal/+cef/webwindow.m',403,0)">line 403</a>)
MATLABWindow application failed to launch. Unable to launch the MATLABWindow application. The exit code was: 1
Error in <a href="matlab:matlab.lang.internal.introspective.errorDocCallback('jupyter.execute>processSymbolic', '/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m', 218)" style="font-weight:bold">jupyter.execute>processSymbolic</a> (<a href="matlab: opentoline('/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m',218,0)">line 218</a>)
webwindow = matlab.internal.cef.webwindow(connector.getUrl(url));
Error in <a href="matlab:matlab.lang.internal.introspective.errorDocCallback('jupyter.execute>processOutputs', '/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m', 124)" style="font-weight:bold">jupyter.execute>processOutputs</a> (<a href="matlab: opentoline('/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m',124,0)">line 124</a>)
result{ii} = processSymbolic(outputData);
Error in <a href="matlab:matlab.lang.internal.introspective.errorDocCallback('jupyter.execute', '/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m', 54)" style="font-weight:bold">jupyter.execute</a> (<a href="matlab: opentoline('/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/+jupyter/execute.m',54,0)">line 54</a>)
result = processOutputs(resp.outputs);
Error in <a href="matlab:matlab.lang.internal.introspective.errorDocCallback('processJupyterKernelRequest', '/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/processJupyterKernelRequest.m', 54)" style="font-weight:bold">processJupyterKernelRequest</a> (<a href="matlab: opentoline('/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/jupyter_matlab_kernel/matlab/processJupyterKernelRequest.m',54,0)">line 54</a>)
output = jupyter.execute(code, kernelId);
Error in connector.internal.fevalMatlab
Error in connector.internal.fevalJSON
Additional Information:
- The issue seems to persist across different sessions and with various symbolic expressions.
- No modifications have been made to the MATLAB installation that could affect the symbolic toolbox.
Browser(s) used
Firefox
Issue found in
MATLAB Kernel
Script output
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
MATLAB
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
matlab - /usr/local/bin/matlab OK
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
matlab-proxy-app
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
matlab-proxy-app - /home/anish/.pyenv/versions/3.10.13/bin/matlab-proxy-app OK
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Jupyter
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
jupyter - /home/anish/.pyenv/versions/3.10.13/bin/jupyter OK
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Python and pip executables
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
python - /home/anish/.pyenv/versions/3.10.13/bin/python OK
Python 3.10.13
pip - /home/anish/.pyenv/versions/3.10.13/bin/pip OK
pip 24.1.2 from /home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/pip (python 3.10)
python3 - /home/anish/.pyenv/versions/3.10.13/bin/python3 OK
Python 3.10.13
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Xvfb
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Xvfb - /usr/bin/Xvfb OK
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
OS information
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Linux
6.11.5-zen1-1-zen
Linux-6.11.5-zen1-1-zen-x86_64-with-glibc2.40
uname_result(system='Linux', node='archlinux', release='6.11.5-zen1-1-zen', version='#1 ZEN SMP PREEMPT_DYNAMIC Tue, 22 Oct 2024 18:31:33 +0000', machine='x86_64')
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Conda information
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
conda - /opt/anaconda/condabin/conda
conda 24.9.2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Installed packages
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
jupyter_ai 2.26.0
jupyter_ai_magics 2.26.0
jupyter_client 8.6.0
jupyter_core 5.7.1
jupyter-events 0.10.0
jupyter-lsp 2.2.5
jupyter-matlab-proxy 0.15.2
jupyter_server 2.14.2
jupyter_server_proxy 4.4.0
jupyter_server_terminals 0.5.3
jupyterlab 4.3.0
jupyterlab_pygments 0.3.0
jupyterlab_server 2.27.3
matlab-proxy 0.23.1
notebook 7.2.2
notebook_shim 0.2.4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Jupyter server extensions
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Config dir: /home/anish/.jupyter
Config dir: /home/anish/.pyenv/versions/3.10.13/etc/jupyter
jupyter_lsp enabled
- Validating jupyter_lsp...
jupyter_lsp 2.2.5 OK
jupyter_server_proxy enabled
- Validating jupyter_server_proxy...
jupyter_server_proxy 4.4.0 OK
jupyter_ai enabled
- Validating jupyter_ai...
/home/anish/.pyenv/versions/3.10.13/lib/python3.10/importlib/__init__.py:126: LangChainDeprecationWarning: As of langchain-core 0.3.0, LangChain uses pydantic v2 internally. The langchain_core.pydantic_v1 module was a compatibility shim for pydantic v1, and should no longer be used. Please update the code to import from Pydantic directly.
For example, replace imports like: `from langchain_core.pydantic_v1 import BaseModel`
with: `from pydantic import BaseModel`
or the v1 compatibility namespace if you are working in a code base that has not been fully upgraded to pydantic 2 yet. from pydantic.v1 import BaseModel
return _bootstrap._gcd_import(name[level:], package, level)
/home/anish/.pyenv/versions/3.10.13/lib/python3.10/site-packages/pydantic/_internal/_config.py:341: UserWarning: Valid config keys have changed in V2:
* 'allow_population_by_field_name' has been renamed to 'populate_by_name'
warnings.warn(message, UserWarning)
X The `__modify_schema__` method is not supported in Pydantic v2. Use `__get_pydantic_json_schema__` instead in class `SecretStr`.
For further information visit https://errors.pydantic.dev/2.9/u/custom-json-schema
jupyter_server_terminals enabled
- Validating jupyter_server_terminals...
jupyter_server_terminals 0.5.3 OK
jupyterlab enabled
- Validating jupyterlab...
jupyterlab 4.3.0 OK
notebook enabled
- Validating notebook...
notebook 7.2.2 OK
notebook_shim enabled
- Validating notebook_shim...
notebook_shim OK
Config dir: /usr/local/etc/jupyter
JupyterLab v4.3.0
/home/anish/.pyenv/versions/3.10.13/share/jupyter/labextensions
jupyter_matlab_labextension v1.0.0 enabled OK (python, jupyter_matlab_labextension)
jupyterlab_pygments v0.3.0 enabled OK (python, jupyterlab_pygments)
@jupyterhub/jupyter-server-proxy v4.4.0 enabled OK
@jupyter-ai/core v2.26.0 enabled OK (python, jupyter_ai)
@jupyter-notebook/lab-extension v7.2.2 enabled X
The following extensions may be outdated or specify dependencies that are incompatible with the current version of jupyterlab:
@jupyter-notebook/lab-extension
If you are a user, check if an update is available for these packages.
If you are a developer, re-run with `--verbose` flag for more details.