Speed up persisting large number of outliers (#16649)

Recalculating the roots tuple every iteration could be very expensive, so instead let's do a topological sort.

Author: erikjohnston

changelog.d/16649.misc

@@ -0,0 +1 @@
+Speed up persisting large number of outliers.

synapse/handlers/federation_event.py

@@ -88,7 +88,7 @@
 )
 from synapse.types.state import StateFilter
 from synapse.util.async_helpers import Linearizer, concurrently_execute
-from synapse.util.iterutils import batch_iter, partition
+from synapse.util.iterutils import batch_iter, partition, sorted_topologically_batched
 from synapse.util.retryutils import NotRetryingDestination
 from synapse.util.stringutils import shortstr
 
@@ -1669,14 +1669,13 @@ async def _auth_and_persist_outliers(
 
         # XXX: it might be possible to kick this process off in parallel with fetching
         # the events.
-        while event_map:
-            # build a list of events whose auth events are not in the queue.
-            roots = tuple(
-                ev
-                for ev in event_map.values()
-                if not any(aid in event_map for aid in ev.auth_event_ids())
-            )
 
+        # We need to persist an event's auth events before the event.
+        auth_graph = {
+            ev: [event_map[e_id] for e_id in ev.auth_event_ids() if e_id in event_map]
+            for ev in event_map.values()
+        }
+        for roots in sorted_topologically_batched(event_map.values(), auth_graph):
             if not roots:
                 # if *none* of the remaining events are ready, that means
                 # we have a loop. This either means a bug in our logic, or that
@@ -1698,9 +1697,6 @@ async def _auth_and_persist_outliers(
 
             await self._auth_and_persist_outliers_inner(room_id, roots)
 
-            for ev in roots:
-                del event_map[ev.event_id]
-
     async def _auth_and_persist_outliers_inner(
         self, room_id: str, fetched_events: Collection[EventBase]
     ) -> None:

synapse/util/iterutils.py

@@ -135,3 +135,54 @@ def sorted_topologically(
                 degree_map[edge] -= 1
                 if degree_map[edge] == 0:
                     heapq.heappush(zero_degree, edge)
+
+
+def sorted_topologically_batched(
+    nodes: Iterable[T],
+    graph: Mapping[T, Collection[T]],
+) -> Generator[Collection[T], None, None]:
+    r"""Walk the graph topologically, returning batches of nodes where all nodes
+    that references it have been previously returned.
+
+    For example, given the following graph:
+
+         A
+        / \
+       B   C
+        \ /
+         D
+
+    This function will return: `[[A], [B, C], [D]]`.
+
+    This function is useful for e.g. batch persisting events in an auth chain,
+    where we can only persist an event if all its auth events have already been
+    persisted.
+    """
+
+    degree_map = {node: 0 for node in nodes}
+    reverse_graph: Dict[T, Set[T]] = {}
+
+    for node, edges in graph.items():
+        if node not in degree_map:
+            continue
+
+        for edge in set(edges):
+            if edge in degree_map:
+                degree_map[node] += 1
+
+            reverse_graph.setdefault(edge, set()).add(node)
+        reverse_graph.setdefault(node, set())
+
+    zero_degree = [node for node, degree in degree_map.items() if degree == 0]
+
+    while zero_degree:
+        new_zero_degree = []
+        for node in zero_degree:
+            for edge in reverse_graph.get(node, []):
+                if edge in degree_map:
+                    degree_map[edge] -= 1
+                    if degree_map[edge] == 0:
+                        new_zero_degree.append(edge)
+
+        yield zero_degree
+        zero_degree = new_zero_degree

tests/util/test_itertools.py

@@ -13,7 +13,11 @@
 # limitations under the License.
 from typing import Dict, Iterable, List, Sequence
 
-from synapse.util.iterutils import chunk_seq, sorted_topologically
+from synapse.util.iterutils import (
+    chunk_seq,
+    sorted_topologically,
+    sorted_topologically_batched,
+)
 
 from tests.unittest import TestCase
 
@@ -107,3 +111,73 @@ def test_multiple_paths(self) -> None:
         graph: Dict[int, List[int]] = {1: [], 2: [1], 3: [2], 4: [3, 2, 1]}
 
         self.assertEqual(list(sorted_topologically([4, 3, 2, 1], graph)), [1, 2, 3, 4])
+
+
+class SortTopologicallyBatched(TestCase):
+    "Test cases for `sorted_topologically_batched`"
+
+    def test_empty(self) -> None:
+        "Test that an empty graph works correctly"
+
+        graph: Dict[int, List[int]] = {}
+        self.assertEqual(list(sorted_topologically_batched([], graph)), [])
+
+    def test_handle_empty_graph(self) -> None:
+        "Test that a graph where a node doesn't have an entry is treated as empty"
+
+        graph: Dict[int, List[int]] = {}
+
+        # For disconnected nodes the output is simply sorted.
+        self.assertEqual(list(sorted_topologically_batched([1, 2], graph)), [[1, 2]])
+
+    def test_disconnected(self) -> None:
+        "Test that a graph with no edges work"
+
+        graph: Dict[int, List[int]] = {1: [], 2: []}
+
+        # For disconnected nodes the output is simply sorted.
+        self.assertEqual(list(sorted_topologically_batched([1, 2], graph)), [[1, 2]])
+
+    def test_linear(self) -> None:
+        "Test that a simple `4 -> 3 -> 2 -> 1` graph works"
+
+        graph: Dict[int, List[int]] = {1: [], 2: [1], 3: [2], 4: [3]}
+
+        self.assertEqual(
+            list(sorted_topologically_batched([4, 3, 2, 1], graph)),
+            [[1], [2], [3], [4]],
+        )
+
+    def test_subset(self) -> None:
+        "Test that only sorting a subset of the graph works"
+        graph: Dict[int, List[int]] = {1: [], 2: [1], 3: [2], 4: [3]}
+
+        self.assertEqual(list(sorted_topologically_batched([4, 3], graph)), [[3], [4]])
+
+    def test_fork(self) -> None:
+        "Test that a forked graph works"
+        graph: Dict[int, List[int]] = {1: [], 2: [1], 3: [1], 4: [2, 3]}
+
+        # Valid orderings are `[1, 3, 2, 4]` or `[1, 2, 3, 4]`, but we should
+        # always get the same one.
+        self.assertEqual(
+            list(sorted_topologically_batched([4, 3, 2, 1], graph)), [[1], [2, 3], [4]]
+        )
+
+    def test_duplicates(self) -> None:
+        "Test that a graph with duplicate edges work"
+        graph: Dict[int, List[int]] = {1: [], 2: [1, 1], 3: [2, 2], 4: [3]}
+
+        self.assertEqual(
+            list(sorted_topologically_batched([4, 3, 2, 1], graph)),
+            [[1], [2], [3], [4]],
+        )
+
+    def test_multiple_paths(self) -> None:
+        "Test that a graph with multiple paths between two nodes work"
+        graph: Dict[int, List[int]] = {1: [], 2: [1], 3: [2], 4: [3, 2, 1]}
+
+        self.assertEqual(
+            list(sorted_topologically_batched([4, 3, 2, 1], graph)),
+            [[1], [2], [3], [4]],
+        )