Merge branch 'master' of https://github.com/mattar13/PhysiologyPlotting.jl

Author: mattar13

Project.toml

@@ -1,7 +1,7 @@
 name = "PhysiologyPlotting"
 uuid = "d5a2a81f-3167-4eb5-8f67-b1ebe6a4430d"
 authors = ["Matthew Tarchick"]
-version = "0.1.16"
+version = "0.1.17"
 
 [deps]
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"

test/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.1"
+julia_version = "1.11.3"
 manifest_format = "2.0"
 project_hash = "f5de69a5cc361b7b80dcc95b68ffcc7a9f1a3eae"
 
@@ -431,9 +431,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
-git-tree-sha1 = "aa87a743e3778d35a950b76fbd2ae64f810a2bb3"
+git-tree-sha1 = "8b9f605f582f633eeb9c3ec14effaed2dca6ef5c"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.6.52"
+version = "0.6.53"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -2262,9 +2262,9 @@ version = "2.0.3+0"
 
 [[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "068dfe202b0a05b8332f1e8e6b4080684b9c7700"
+git-tree-sha1 = "002748401f7b520273e2b506f61cab95d4701ccf"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.47+0"
+version = "1.6.48+0"
 
 [[deps.libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]

test/revision.jl

@@ -11,26 +11,21 @@ using PhysiologyAnalysis
 
 # ╔═╡This task is for extraction of points, centroids, and ROIs using cellpose
 #Kpuff looks really good
-
-# #We should look through the available files and see which ones fit
-# img_fn = raw"F:\Data\Two Photon\2025-05-02-GRAB-DA-nirCAT-STR\grab-nircat-str-20hz-100uA001.tif"
-# stim_fn = raw"F:\Data\Patching\2025-05-02-GRAB-DA-STR\25502000.abf"
-
-#Good but a big bubble
-# img_fn = raw"F:\Data\Two Photon\2025-05-02-GRAB-DA-nirCAT-STR\grab-nircat-str-3s_20hz_30uA_3x006.tif"
-# stim_fn = raw"F:\Data\Patching\2025-05-02-GRAB-DA-STR\25502007.abf"
-
 img_fn = raw"F:\Data\Two Photon\2025-05-02-GRAB-DA-nirCAT-STR\grab-nircat-str-kpuff011.tif"
 stim_fn = raw"F:\Data\Patching\2025-05-02-GRAB-DA-STR\25502015.abf"
 
-#%%
 img_fn = raw"F:\Data\Two Photon\2025-05-02-GRAB-DA-nirCAT-STR\grab-nircat-str-kpuff_3x012.tif"
 stim_fn = raw"F:\Data\Patching\2025-05-02-GRAB-DA-STR\25502017.abf"
 
+#%%
+#Electrical Stimulus
+img_fn = raw"H:\Data\Two Photon\2025-03-05-GRAB-DA-STRIATUM\grab-da_b4_str_stim500uA_3x_NOMF046.tif"
+stim_fn = raw"H:\Data\Patching\2025-03-26-GRAB-DA_STR\25326050.abf"
+
 data2P = readImage(img_fn);
 deinterleave!(data2P) #This seperates the movies into two seperate movies
 
-spike_train = false
+spike_train = true
 if spike_train
     #If we have a electrical stimulus we need to do the spike train analysis
     addStimulus!(data2P, stim_fn, "IN 3", flatten_episodic = true, stimulus_threshold = 0.5)
@@ -76,11 +71,11 @@ fig_raw = PhysiologyPlotting.plot_analysis(data2P)
 
 #%%
 # Save the raw analysis figure
-save(raw"F:\Data\Analysis\StriatumAnalysis\Potassium Puffs\fig_raw.png", fig_raw)
+save(raw"H:\Data\Analysis\fig_raw_striatum_elec.png", fig_raw)
 
 #%%
 fig = plot_roi_analysis(data2P, stim_idx = 2)
 display(fig)
+save(raw"H:\Data\Analysis\fig_roi_analysis_striatum_elec.png", fig)
 
-# Save the ROI analysis figure
-save(raw"F:\Data\Analysis\StriatumAnalysis\Potassium Puffs\fig_roi_analysis.png", fig)
+# Save the ROI analysis figure