merged develop

Author: matthiaskoenig

pyproject.toml

@@ -35,22 +35,22 @@ keywords = [
     "computational modeling",
 ]
 dependencies = [
-    "pymetadata>=0.5.8",
+    "pymetadata>=0.5.9",
 	"depinfo",
 	"rich",
 	"lxml",
 	"requests",
 	"jinja2",
 	"xmltodict",
-	"pydantic>2.12",
+	"pydantic>=2.12.5",
 
 	"numpy>=2.2.2",
 	"scipy>=1.14",
 	"pandas>=2.2.0",
-    "python-libsbml>=5.20.5",
-	"antimony>=3.1.0",
-	"libroadrunner>=2.8.0",
-	"pint>=0.25",
+    "python-libsbml>=5.21.0",
+	"antimony>=3.1.1",
+	"libroadrunner>=2.9.0",
+	"pint>=0.25.2",
 
     "markdown-it-py>=4.0.0",
 	"openpyxl>=3.1.5",
@@ -65,14 +65,14 @@ dependencies = [
 ]
 [project.optional-dependencies]
 dev = [
-    "bump-my-version>=1.2.4",
-	"ruff>=0.14.0",
-	"pre-commit>=4.3.0",
-	"mypy>=1.18.2",
+    "bump-my-version>=1.2.6",
+	"ruff>=0.14.11",
+	"pre-commit>=4.5.1",
+	"mypy>=1.19.1",
 ]
 test = [
-    "tox>=4.31.0",
-    "pytest>=8.4.2",
+    "tox>=4.34.1",
+    "pytest>=9.0.2",
     "pytest-cov>=7.0.0",
 ]
 

release-notes/0.9.5.md

@@ -9,5 +9,8 @@ following changes:
 - annotation bugfixes
 - fixing mypy issues
 - fixing ruff issues
+- update python-libsbml to 5.21.0
+- update libroadrunner to 2.9.0
+- update antimony to 3.1.1
 
 Your sbmlutils team