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add ReshapeImage.m and PermuteDimensions.m
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6 files changed

+213
-14
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6 files changed

+213
-14
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‎ImageM/+imagem/+actions/+image/PermuteDimensions.m‎

Lines changed: 86 additions & 0 deletions
Original file line numberDiff line numberDiff line change
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classdef PermuteDimensions < imagem.actions.CurrentImageAction
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% Re-order the dimensions of an image.
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%
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% Class PermuteDimensions
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%
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% Example
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% PermuteDimensions
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%
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% See also
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%
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% ------
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% Author: David Legland
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% e-mail: [email protected]
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% Created: 2020-02-14, using Matlab 8.6.0.267246 (R2015b)
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% Copyright 2020 INRAE - BIA-BIBS.
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%% Properties
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properties
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end % end properties
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%% Constructor
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methods
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function obj = PermuteDimensions(varargin)
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% Constructor for PermuteDimensions class
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end
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end % end constructors
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%% Methods
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methods
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function run(obj, frame) %#ok<INUSL,INUSD>
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% get handle to current doc
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doc = currentDoc(frame);
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img = doc.Image;
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% Create the string for ordering dimensions
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nd = 5;
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baseString = ['1' sprintf(repmat(', %d', 1, nd-1), 2:nd)];
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% creates a new dialog, and populates it with some fields
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gd = imagem.gui.GenericDialog('Permute Dimensions');
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addTextField(gd, 'New Order: ', baseString);
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% displays the dialog, and waits for user
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showDialog(gd);
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% check if ok or cancel was clicked
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if wasCanceled(gd)
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return;
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end
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% get dialog options
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orderString = getNextString(gd);
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tokens = strsplit(orderString, ', ');
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inds = str2num(char(tokens')); %#ok<ST2NM>
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% create image with permuted dimensions
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res = permute(img, inds);
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% add image to application, and create new display
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[viewer2, doc2] = createImageFrame(frame.Gui, res);
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% keep display settings if channel dim stays the same
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if inds(4) == 4
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viewer2.DisplayRange = frame.DisplayRange;
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end
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% add history
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newDimsString = sprintf('[%d %d %d %d %d]', inds);
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string = sprintf('%s = permute(%s, %s);\n', ...
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doc2.Tag, doc.Tag, newDimsString);
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addToHistory(frame, string);
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end
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end % end methods
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end % end classdef
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‎ImageM/+imagem/+actions/+image/ReshapeImage.m‎

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classdef ReshapeImage < imagem.actions.CurrentImageAction
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% Reshape current image.
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%
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% Class ReshapeImageAction
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%
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% Example
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% ReshapeImageAction
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%
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% See also
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%
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% ------
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% Author: David Legland
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% e-mail: [email protected]
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% Created: 2012-05-18, using Matlab 7.9.0.529 (R2009b)
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% Copyright 2012 INRA - Cepia Software Platform.
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%% Properties
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properties
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end % end properties
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%% Constructor
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methods
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function obj = ReshapeImage()
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% Constructor for the ReshapeImage action.
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end
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end % end constructors
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%% Methods
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methods
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function run(obj, frame) %#ok<INUSL,INUSD>
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% get current image
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doc = currentDoc(frame);
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img = doc.Image;
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dims = size(img, 1:5);
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ZCT = prod(dims(3:5));
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newDims = dims;
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while true
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% create dialog
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gd = imagem.gui.GenericDialog('Reshape Image');
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addNumericField(gd, 'Size X:', newDims(1), 0);
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addNumericField(gd, 'Size Y:', newDims(2), 0);
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addNumericField(gd, 'Size Z:', newDims(3), 0);
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addNumericField(gd, 'Channels (C):', newDims(4), 0);
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addNumericField(gd, 'Frames (T):', newDims(5), 0);
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addMessage(gd, sprintf('ZxCxT must equal %d', ZCT));
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showDialog(gd);
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if wasCanceled(gd)
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return;
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end
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% parse dialog options
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newDims = zeros([1 5]);
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newDims(1) = getNextNumber(gd);
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newDims(2) = getNextNumber(gd);
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newDims(3) = getNextNumber(gd);
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newDims(4) = getNextNumber(gd);
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newDims(5) = getNextNumber(gd);
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if prod(newDims) == prod(dims)
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break;
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end
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end
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res = reshape(img, newDims);
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% add image to application, and create new display
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[newFrame, newDoc] = createImageFrame(frame.Gui, res); %#ok<ASGLU>
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% add history
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newShapeString = sprintf('[%d %d %d %d %d]', newDims);
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string = sprintf('%s = reshape(%s, %s);\n', ...
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newDoc.Tag, doc.Tag, newShapeString);
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addToHistory(frame, string);
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end
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end
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end % end classdef
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‎ImageM/+imagem/+gui/FrameMenuBuilder.m‎

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -136,7 +136,9 @@ function buildImageFrameMenu(obj, hf)
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addMenuItem(obj, convertMenu, ConvertVectorImageToRGB(), 'Vector Image to RGB');
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addMenuItem(obj, convertMenu, UnfoldVectorImage(), 'Unfold Vector Image to Table', 'Separator', 'on');
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addMenuItem(obj, convertMenu, UnfoldVectorImageWithMask(), 'Unfold Vector Image Within Mask to Table...');
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addMenuItem(obj, imageMenu, ReshapeImage(), 'Reshape...');
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addMenuItem(obj, imageMenu, PermuteDimensions(), 'Permute Dimensions...');
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addMenuItem(obj, imageMenu, FlipImage(1), 'Horizontal Flip', 'Separator', 'on');
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addMenuItem(obj, imageMenu, FlipImage(2), 'Vertical Flip');
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addMenuItem(obj, imageMenu, RotateImage90(1), 'Rotate Right');

‎ImageM/+imagem/+gui/GenericDialog.m‎

Lines changed: 21 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -320,7 +320,27 @@ function createLayout(obj, varargin)
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set(obj.Handles.MainPanel, 'Heights', obj.BoxSizes);
321321
end
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function ht = addMessage(obj, text)
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% Add a text message to this dialog.
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%
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% usage:
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% addMessage(GD, MSGTEXT);
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hLine = uix.HBox('Parent', obj.Handles.MainPanel, ...
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'Spacing', 5, 'Padding', 5);
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% Label of the widget
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ht = addLabel(hLine, text);
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% setup size in horizontal direction
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set(hLine, 'Widths', -1);
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% update vertical size of widgets
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obj.BoxSizes = [obj.BoxSizes 25];
341+
set(obj.Handles.MainPanel, 'Heights', obj.BoxSizes);
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end
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end % end methods
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‎ImageM/+imagem/+gui/Image5DSliceViewer.m‎

Lines changed: 10 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -141,10 +141,11 @@ function setupLayout(obj)
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zstep1 = 1/zmax;
142142
zstep2 = max(min(10/zmax, .5), zstep1);
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144+
text = sprintf('Slice index (%d/%d)', obj.SliceIndex, zmax);
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obj.Handles.SliceIndexLabel = uicontrol(...
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'Parent', obj.Handles.DisplayOptionsPanel, ...
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'Style', 'text', ...
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'String', 'Slice Index', ...
148+
'String', {'', text}, ...
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'HorizontalAlignment', 'left');
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150151
obj.Handles.SliceIndexSlider = uicontrol('Style', 'slider', ...
@@ -169,11 +170,12 @@ function setupLayout(obj)
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tmax = size(img, 5);
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tstep1 = 1/tmax;
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tstep2 = max(min(10/tmax, .5), tstep1);
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text = sprintf('Frame index (%d/%d)', obj.FrameIndex, tmax);
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obj.Handles.FrameIndexLabel = uicontrol(...
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'Parent', obj.Handles.DisplayOptionsPanel, ...
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'Style', 'text', ...
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'String', 'Frame Index', ...
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'String', {'', text}, ...
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'HorizontalAlignment', 'left');
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obj.Handles.FrameIndexSlider = uicontrol('Style', 'slider', ...
@@ -253,6 +255,8 @@ function updateSliceIndex(obj, newIndex)
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254256
obj.SliceIndex = newIndex;
255257

258+
text = sprintf('Slice index (%d/%d)', newIndex, size(obj.Doc.Image, 3));
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set(obj.Handles.SliceIndexLabel, 'String', {'', text});
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% updateSliceImage(obj);
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258262
updateDisplay(obj);
@@ -269,6 +273,9 @@ function updateFrameIndex(obj, newIndex)
269273
end
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271275
obj.FrameIndex = newIndex;
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text = sprintf('Frame index (%d/%d)', newIndex, size(obj.Doc.Image, 5));
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set(obj.Handles.FrameIndexLabel, 'String', {'', text});
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273280
updateDisplay(obj);
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‎ImageM/+imagem/+gui/ImageViewer.m‎

Lines changed: 6 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -135,18 +135,15 @@ function updateTitle(obj)
135135
% compute new title string
136136
nd = ndims(obj.Doc.Image);
137137
sizePattern = ['%d' repmat(' x %d', 1, nd-1)];
138-
sizeString = sprintf(sizePattern, size(obj.Doc.Image));
138+
sizeString = sprintf(sizePattern, size(obj.Doc.Image, 1:nd));
139+
nf = size(obj.Doc.Image, 5);
140+
if nf > 1
141+
sizeString = sprintf('%s (x%d)', sizeString, nf);
142+
end
139143
zoomString = sprintf('%g:%g', max(1, zoom), max(1, 1/zoom));
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titlePattern = '%s [%s %s] - %s - ImageM';
141145
titleString = sprintf(titlePattern, imgName, sizeString, type, zoomString);
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% titlePattern = 'ImageM - %s [%d x %d %s] - %g:%g';
143-
% titleString = sprintf(titlePattern, imgName, ...
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% size(obj.Doc.Image), type, max(1, zoom), max(1, 1/zoom));
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% % compute new title string
146-
% titlePattern = 'ImageM - %s [%d x %d x %d %s] - %g:%g';
147-
% titleString = sprintf(titlePattern, imgName, ...
148-
% size(obj.Doc.Image), type, max(1, zoom), max(1, 1/zoom));
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146+
150147
% display new title
151148
set(obj.Handles.Figure, 'Name', titleString);
152149
end

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