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add ImportImageSeries.m
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+126
-13
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3 files changed

+126
-13
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‎ImageM/+imagem/+actions/+file/ImportImageFromBinaryFile.m‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,7 @@
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%% Methods
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methods
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function run(obj, frame) %#ok<INUSL>
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disp('% Open new table ');
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disp('% Open image from raw file');
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% get handle to parent GUI
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gui = frame.Gui;
@@ -44,7 +44,7 @@ function run(obj, frame) %#ok<INUSL>
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'*.raw,' 'Raw Files (*.raw)'; ...
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'*.vol,' 'Vol Files (*.vol)'; ...
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'*.*', 'All Files (*.*)'}, ...
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'Choose a data table file to open:');
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'Choose binary data file:');
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if isequal(fileName,0) || isequal(pathName,0)
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return;

‎ImageM/+imagem/+actions/+file/ImportImageSeries.m‎

Lines changed: 111 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,111 @@
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classdef ImportImageSeries < imagem.gui.Action
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% One-line description here, please.
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%
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% Class ImportImageSeries
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%
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% Example
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% ImportImageSeries
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%
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% See also
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%
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% ------
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% Author: David Legland
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% e-mail: [email protected]
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% Created: 2020-12-28, using Matlab 9.8.0.1323502 (R2020a)
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% Copyright 2020 INRAE - BIA-BIBS.
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%% Properties
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properties
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end % end properties
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%% Constructor
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methods
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function obj = ImportImageSeries(varargin)
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% Constructor for ImportImageSeries class.
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end
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end % end constructors
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%% Methods
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methods
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function run(obj, frame) %#ok<INUSL>
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disp('% Open Image sequence ');
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% get handle to parent GUI
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gui = frame.Gui;
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[fileName, pathName] = uigetfile( ...
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{'*.raw;*.bin;*.tif;*.vol', 'All Binary Files (*.raw, *.bin, *.tif, *.vol)'; ...
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'*.tif,' 'Tif Files (*.tif)'; ...
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'*.raw,' 'Raw Files (*.raw)'; ...
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'*.vol,' 'Vol Files (*.vol)'; ...
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'*.*', 'All Files (*.*)'}, ...
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'Choose an image from sequence:');
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if isequal(fileName,0) || isequal(pathName,0)
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return;
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end
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% default pattern
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[~, ~, ext] = fileparts(fileName);
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pattern = ['*' ext];
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fileList = dir(fullfile(pathName, pattern));
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nFiles = length(fileList);
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% creates a new dialog, and populates it with some fields
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gd = imagem.gui.GenericDialog('Import Image Series');
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addMessage(gd, 'Base Name: ');
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addMessage(gd, fileName);
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addTextField(gd, 'File Name Pattern: ', pattern);
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addNumericField(gd, 'Number of images: ', nFiles);
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addNumericField(gd, 'Starting index: ', 1);
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% displays the dialog, and waits for user
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showDialog(gd);
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% check if ok or cancel was clicked
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if wasCanceled(gd)
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return;
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end
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% parse the user inputs
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pattern = getNextString(gd);
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nImages = getNextNumber(gd);
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index0 = getNextNumber(gd);
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% read first image
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fileList = dir(fullfile(pathName, pattern));
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img0 = Image.read(fullfile(pathName, fileList(index0).name));
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% allocte memory for full series
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sizeX = size(img0, 1);
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sizeY = size(img0, 2);
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img = Image.create([sizeX sizeY nImages], class(img0.Data));
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img.Data(:,:,1,:) = img0.Data;
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% read the remaining images
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fileList = dir(fullfile(pathName, pattern));
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for i = 1:nImages
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index = index0 + i - 1;
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img_i = Image.read(fullfile(pathName, fileList(index).name));
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img.Data(:,:,i,:) = img_i.Data;
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end
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img.Name = pattern;
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% add image to application, and create new display
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[frame, doc] = createImageFrame(gui, img);
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% add history
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string = sprintf('%s = Image.importSequence;\n', doc.Tag);
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addToHistory(frame, string);
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end
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end % end methods
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end % end classdef
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‎ImageM/+imagem/+gui/FrameMenuBuilder.m‎

Lines changed: 13 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -75,23 +75,25 @@ function buildImageFrameMenu(obj, hf)
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fileMenu = addMenu(obj, hf, 'Files');
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addMenuItem(obj, fileMenu, CreateImage(), 'New Image...', 'Accelerator', 'N');
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addMenuItem(obj, fileMenu, OpenImage(), 'Open Image...', 'Accelerator', 'O');
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addMenuItem(obj, fileMenu, ImportImageFromBinaryFile(), 'Import from binary file...');
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addMenuItem(obj, fileMenu, CreateImage(), 'New Image...', 'Accelerator', 'N');
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addMenuItem(obj, fileMenu, OpenImage(), 'Open Image...', 'Accelerator', 'O');
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importMenu = addMenu(obj, fileMenu, 'Import');
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addMenuItem(obj, importMenu, ImportImageFromBinaryFile(), 'Import from binary file...');
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addMenuItem(obj, importMenu, ImportImageSeries(), 'Import Image Series...');
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addMenuItem(obj, importMenu, ImportImageFromWorkspace(), 'Import From Workspace...');
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demoMenu = addMenu(obj, fileMenu, 'Open Demo', 'Separator', 'on');
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addMenuItem(obj, demoMenu, OpenDemoImage('cameraman.tif'), 'Cameraman (grayscale)');
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addMenuItem(obj, demoMenu, OpenDemoImage('rice.png'), 'Rice (grayscale)');
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addMenuItem(obj, demoMenu, OpenDemoImage('coins.png'), 'Coins (grayscale)');
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addMenuItem(obj, demoMenu, OpenDemoImage('peppers.png'), 'Peppers (RGB)');
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addMenuItem(obj, demoMenu, OpenDemoImage('mri.tif'), 'MRI Head (3D)');
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addMenuItem(obj, demoMenu, OpenDemoImage('xylophone.mp4'), 'Xylophone (movie)');
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addMenuItem(obj, demoMenu, OpenDemoImage('circles.png'), 'Circles (binary)');
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addMenuItem(obj, demoMenu, OpenDemoImage('text.png'), 'Text (binary)');
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addMenuItem(obj, demoMenu, OpenDemoImage('rice.png'), 'Rice (grayscale)');
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addMenuItem(obj, demoMenu, OpenDemoImage('coins.png'), 'Coins (grayscale)');
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addMenuItem(obj, demoMenu, OpenDemoImage('peppers.png'), 'Peppers (RGB)');
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addMenuItem(obj, demoMenu, OpenDemoImage('mri.tif'), 'MRI Head (3D)');
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addMenuItem(obj, demoMenu, OpenDemoImage('xylophone.mp4'), 'Xylophone (movie)');
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addMenuItem(obj, demoMenu, OpenDemoImage('circles.png'), 'Circles (binary)');
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addMenuItem(obj, demoMenu, OpenDemoImage('text.png'), 'Text (binary)');
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addMenuItem(obj, demoMenu, OpenDemoTable('fisherIris.txt'), 'Fisher Iris (Table)', 'Separator', 'on');
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addMenuItem(obj, fileMenu, OpenTable(), 'Open Table...');
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94-
addMenuItem(obj, fileMenu, ImportImageFromWorkspace(), 'Import From Workspace...');
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addMenuItem(obj, fileMenu, SaveImage(), 'Save As...', ...
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'Separator', 'on', 'Accelerator', 'S');

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