Update CI

Author: ThePituLegend

.github/workflows/build_and_test.yaml

@@ -62,10 +62,4 @@ jobs:
     - name: Run Tests
       shell: bash
       working-directory: ${{ steps.strings.outputs.build-dir }}
-      run: |
-        if [[ "${{ matrix.os }}" == "windows-2022" ]]; then
-          # Python tests do not seem to work on Windows CI environments
-          ctest --build-config ${{ matrix.build_type }} --parallel 4 --output-on-failure -E "edlib_tests|test_binding_basic_py|test_binding_align_benchmark_py"
-        else
-          ctest --build-config ${{ matrix.build_type }} --parallel 4 --output-on-failure -E edlib_tests
-        fi
+      run: ctest --build-config ${{ matrix.build_type }} --parallel 4 --output-on-failure -E edlib_tests

.github/workflows/python_wheels.yaml

@@ -1,24 +1,15 @@
 name: Build Python Wheels
 
 on:
-  push:
-    branches: [main]
-    paths-ignore: # Skip the workflow if only documentation files are changed
-      - "**/*.md"
-      - "**/LICENSE"
-  pull_request:
-    branches: [main]
-    paths-ignore: # Skip the workflow if only documentation files are changed
-      - "**/*.md"
-      - "**/LICENSE"
+  release:
+    types: [created]
   workflow_dispatch:
 
 jobs:
   build_wheels:
     name: Build wheels on ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     strategy:
-      fail-fast: false
       matrix:
         os: [ubuntu-24.04, macos-13, macos-14, windows-2022] # Macos 13 (Intel) / Macos 14 (Apple Silicon)
 

examples/CMakeLists.txt

@@ -35,7 +35,7 @@ endforeach ()
 # Python Binding Examples
 find_package(Python3 REQUIRED COMPONENTS Interpreter)
 
-add_test(NAME binding_install_py COMMAND ${Python3_EXECUTABLE} -m pip install --user ${PROJECT_SOURCE_DIR})
+add_test(NAME binding_install_py COMMAND ${Python3_EXECUTABLE} -m pip install --user --break-system-packages ${PROJECT_SOURCE_DIR})
 set_tests_properties(binding_install_py PROPERTIES
     FIXTURES_SETUP python_setup) # Phony test to install the Python bindings
 
@@ -47,8 +47,4 @@ add_test(NAME test_binding_align_benchmark_py COMMAND
     ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/bindings/align_benchmark.py ${PROJECT_SOURCE_DIR}/tests/test_data/ONT.MiniION.1.seq)
 set_tests_properties(test_binding_align_benchmark_py PROPERTIES LABELS "examples")
 set_tests_properties(test_binding_align_benchmark_py PROPERTIES PASS_REGULAR_EXPRESSION "Score: 39743")
-set_tests_properties(test_binding_align_benchmark_py PROPERTIES FIXTURES_REQUIRED python_setup)
-
-add_test(NAME binding_cleanup_py COMMAND ${Python3_EXECUTABLE} -m pip uninstall -y quicked)
-set_tests_properties(binding_cleanup_py PROPERTIES
-    FIXTURES_CLEANUP python_setup) # Phony test to uninstall the Python bindings
+set_tests_properties(test_binding_align_benchmark_py PROPERTIES FIXTURES_REQUIRED python_setup)