Update tests for new Python binding approach

Author: ThePituLegend

examples/CMakeLists.txt

@@ -35,12 +35,20 @@ endforeach ()
 # Python Binding Examples
 find_package(Python3 REQUIRED COMPONENTS Interpreter)
 
+add_test(NAME binding_install_py COMMAND ${Python3_EXECUTABLE} -m pip install --user ${PROJECT_SOURCE_DIR})
+set_tests_properties(binding_install_py PROPERTIES
+    FIXTURES_SETUP python_setup) # Phony test to install the Python bindings
+
 add_test(NAME test_binding_basic_py COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/bindings/basic.py)
-set_tests_properties(test_binding_basic_py PROPERTIES ENVIRONMENT "PYTHONPATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}")
 set_tests_properties(test_binding_basic_py PROPERTIES LABELS "examples")
+set_tests_properties(test_binding_basic_py PROPERTIES FIXTURES_REQUIRED python_setup)
 
 add_test(NAME test_binding_align_benchmark_py COMMAND
     ${Python3_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/bindings/align_benchmark.py ${PROJECT_SOURCE_DIR}/tests/test_data/ONT.MiniION.1.seq)
-set_tests_properties(test_binding_align_benchmark_py PROPERTIES ENVIRONMENT "PYTHONPATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}")
 set_tests_properties(test_binding_align_benchmark_py PROPERTIES LABELS "examples")
-set_property(TEST test_binding_align_benchmark_py PROPERTY PASS_REGULAR_EXPRESSION "Score: 39743")
+set_tests_properties(test_binding_align_benchmark_py PROPERTIES PASS_REGULAR_EXPRESSION "Score: 39743")
+set_tests_properties(test_binding_align_benchmark_py PROPERTIES FIXTURES_REQUIRED python_setup)
+
+add_test(NAME binding_cleanup_py COMMAND ${Python3_EXECUTABLE} -m pip uninstall -y quicked)
+set_tests_properties(binding_cleanup_py PROPERTIES
+    FIXTURES_CLEANUP python_setup) # Phony test to uninstall the Python bindings

tests/CMakeLists.txt

@@ -8,30 +8,30 @@ add_dependencies(tests quicked_harness)
 
 # Add the tests
 add_test(NAME test_empty COMMAND $<TARGET_FILE:quicked_harness> "" "")
-set_property(TEST test_empty PROPERTY PASS_REGULAR_EXPRESSION "ERROR: Tried to align an empty sequence")
+set_tests_properties(test_empty PROPERTIES PASS_REGULAR_EXPRESSION "ERROR: Tried to align an empty sequence")
 
 add_test(NAME test_nonDNA COMMAND $<TARGET_FILE:quicked_harness> "GATC" "GATO" 1)
 
 if(UNIX)
     set(RANDOM_TEST_SCRIPT ${CMAKE_CURRENT_SOURCE_DIR}/random_test.sh)
 
     add_test(NAME test_l1000_n10000_e10 COMMAND ${RANDOM_TEST_SCRIPT} 1000 10000 10 quicked_harness)
-    set_property(TEST test_l1000_n10000_e10 PROPERTY
+    set_tests_properties(test_l1000_n10000_e10 PROPERTIES
         ENVIRONMENT "BIN_DIR=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}")
 
     add_test(NAME test_l10000_n1000_e10 COMMAND ${RANDOM_TEST_SCRIPT} 10000 1000 10 quicked_harness)
-    set_property(TEST test_l10000_n1000_e10 PROPERTY
+    set_tests_properties(test_l10000_n1000_e10 PROPERTIES
         ENVIRONMENT "BIN_DIR=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}")
 
     add_test(NAME test_l100000_n100_e10 COMMAND ${RANDOM_TEST_SCRIPT} 100000 100 10 align_benchmark)
-    set_property(TEST test_l100000_n100_e10 PROPERTY
+    set_tests_properties(test_l100000_n100_e10 PROPERTIES
         ENVIRONMENT "BIN_DIR=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}")
 
     add_test(NAME test_l1000000_n10_e10 COMMAND ${RANDOM_TEST_SCRIPT} 1000000 10 10 align_benchmark)
-    set_property(TEST test_l1000000_n10_e10 PROPERTY FAIL_REGULAR_EXPRESSION "INACCURATE SCORE")
-    set_property(TEST test_l1000000_n10_e10 PROPERTY
+    set_tests_properties(test_l1000000_n10_e10 PROPERTIES FAIL_REGULAR_EXPRESSION "INACCURATE SCORE")
+    set_tests_properties(test_l1000000_n10_e10 PROPERTIES
         ENVIRONMENT "BIN_DIR=${CMAKE_RUNTIME_OUTPUT_DIRECTORY}")
 endif()
 
 add_test(NAME test_MiniION_align_benchmark COMMAND $<TARGET_FILE:align_benchmark> -i ${CMAKE_CURRENT_SOURCE_DIR}/test_data/ONT.MiniION.1.seq -c "score" -v)
-set_property(TEST test_MiniION_align_benchmark PROPERTY FAIL_REGULAR_EXPRESSION "INACCURATE SCORE")
+set_tests_properties(test_MiniION_align_benchmark PROPERTIES FAIL_REGULAR_EXPRESSION "INACCURATE SCORE")