Aviti checklist

[WardDeb]

• lane splitting
• Determining PE and dualIx booleans should be made explicit from runParameters.json, they are now set by default to true under sampleSheet class.
• Reorganize stats in specific sample folders
• parse finalmetrics for parkour
• per sample based Q30 metrics split per read ?
• reads PF
• barcode masking and mismatches
• Lane split, masking functionality for aviti should get their own unit tests.
• unfix bases2fastq version in misc.py
• replace self.sequencer with an 'aviti' flag for switching the pipeline logic to allow for multiple aviti sequencer names
• simplify detMask logic wrt. illumina - aviti decisions
• set up aviti detmask tests
• opt dups for aviti under 'nextseq' parameters