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summarytable.tex
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31 lines (31 loc) · 4.35 KB
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\begin{tabular}{lrrrrr}
\toprule
sample & targeted subamplicon barcode complexity & targeted total barcode complexity & total reads & total aligned barcodes & median effective depth \\
\midrule
L1\_H17L10 & 150000 & 900000 & 4041487 & 407110 & 66459 \\
L1\_H17L19\_c1\_r1 & 150000 & 900000 & 8695632 & 710204 & 114457 \\
L1\_H17L19\_c1\_r2 & 150000 & 900000 & 8624087 & 711932 & 111935 \\
L1\_H17L19\_c2\_r1 & 150000 & 900000 & 8741879 & 694883 & 108903 \\
L1\_H17L19\_c2\_r2 & 150000 & 900000 & 8511629 & 687655 & 108645 \\
L1\_H17L19\_c3\_r1 & 150000 & 900000 & 8192158 & 645638 & 103958 \\
L1\_H17L19\_c3\_r2 & 150000 & 900000 & 8442463 & 644335 & 101350 \\
L1\_H17L7 & 150000 & 900000 & 2897563 & 668184 & 110674 \\
L1\_H18S415 & 150000 & 900000 & 3639853 & 629643 & 101859 \\
L1\_mock\_r1 & 700000 & 4200000 & 7533263 & 1601770 & 234020 \\
L1\_mock\_r2 & 700000 & 4200000 & 8048792 & 1717683 & 261924 \\
L2\_H17L10 & 150000 & 900000 & 3932784 & 422093 & 69109 \\
L2\_H17L19\_c1 & 150000 & 900000 & 5204031 & 498120 & 75830 \\
L2\_H17L19\_c2 & 150000 & 900000 & 5515902 & 427803 & 66994 \\
L2\_H17L19\_c3 & 150000 & 900000 & 5097722 & 415332 & 64041 \\
L2\_H17L7 & 150000 & 900000 & 3264651 & 664082 & 109002 \\
L2\_H18S415 & 150000 & 900000 & 3559630 & 711546 & 111575 \\
L2\_mock & 500000 & 3000000 & 8802646 & 1341443 & 227037 \\
L3\_H17L10 & 150000 & 900000 & 2972786 & 657891 & 109015 \\
L3\_H17L19\_c1 & 150000 & 900000 & 5073955 & 399545 & 64014 \\
L3\_H17L19\_c2 & 150000 & 900000 & 5356951 & 402038 & 68581 \\
L3\_H17L19\_c3 & 150000 & 900000 & 4080539 & 426897 & 68626 \\
L3\_H17L7 & 150000 & 900000 & 3704509 & 723491 & 118145 \\
L3\_H18S415 & 150000 & 900000 & 3376534 & 660742 & 106292 \\
L3\_mock & 500000 & 3000000 & 9195791 & 1349386 & 226479 \\
\bottomrule
\end{tabular}