Add infectious disease publications to inspirations and grants table to research projects #1126
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Render and Publish | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| # Required permissions for GitHub Pages deployment | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| # Prevent concurrent deployments | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: false | |
| jobs: | |
| # Build job - renders Quarto project | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| permissions: | |
| contents: read | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| cache: 'pip' | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Render Quarto Project | |
| uses: quarto-dev/quarto-actions/render@v2 | |
| # Upload PR preview artifact | |
| - name: Upload PR preview artifact | |
| if: github.event_name == 'pull_request' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pr-preview-${{ github.event.pull_request.number }} | |
| path: _site | |
| retention-days: 7 | |
| compression-level: 6 | |
| # Configure and upload for GitHub Pages (main branch only) | |
| - name: Setup Pages | |
| if: github.ref == 'refs/heads/main' | |
| uses: actions/configure-pages@v5 | |
| - name: Upload Pages artifact | |
| if: github.ref == 'refs/heads/main' | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: _site | |
| # Create comprehensive build summary | |
| - name: Create build summary | |
| if: always() | |
| run: | | |
| echo "## 📊 Quarto Build Summary" >> $GITHUB_STEP_SUMMARY | |
| echo "" >> $GITHUB_STEP_SUMMARY | |
| echo "| Property | Value |" >> $GITHUB_STEP_SUMMARY | |
| echo "|----------|-------|" >> $GITHUB_STEP_SUMMARY | |
| echo "| Event | ${{ github.event_name }} |" >> $GITHUB_STEP_SUMMARY | |
| echo "| Branch | ${{ github.ref_name }} |" >> $GITHUB_STEP_SUMMARY | |
| echo "| Commit | \`${{ github.sha }}\` |" >> $GITHUB_STEP_SUMMARY | |
| echo "| Workflow | [${{ github.workflow }}](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}) |" >> $GITHUB_STEP_SUMMARY | |
| echo "" >> $GITHUB_STEP_SUMMARY | |
| if [ "${{ github.event_name }}" = "pull_request" ]; then | |
| echo "### ✅ PR Preview" >> $GITHUB_STEP_SUMMARY | |
| echo "Site rendered successfully for PR #${{ github.event.pull_request.number }}" >> $GITHUB_STEP_SUMMARY | |
| echo "" >> $GITHUB_STEP_SUMMARY | |
| echo "Download the artifact from the [Actions tab](${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}) to preview the changes." >> $GITHUB_STEP_SUMMARY | |
| elif [ "${{ github.ref }}" = "refs/heads/main" ]; then | |
| echo "### ✅ Production Build" >> $GITHUB_STEP_SUMMARY | |
| echo "Site rendered successfully and ready for deployment to GitHub Pages." >> $GITHUB_STEP_SUMMARY | |
| else | |
| echo "### ✅ Build Complete" >> $GITHUB_STEP_SUMMARY | |
| echo "Site rendered successfully." >> $GITHUB_STEP_SUMMARY | |
| fi | |
| # Deploy job - deploys to GitHub Pages (main branch only) | |
| deploy: | |
| if: github.ref == 'refs/heads/main' | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| needs: build | |
| permissions: | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| - name: Create deployment summary | |
| if: success() | |
| run: | | |
| echo "## 🚀 Deployment Complete" >> $GITHUB_STEP_SUMMARY | |
| echo "" >> $GITHUB_STEP_SUMMARY | |
| echo "The site has been successfully deployed to GitHub Pages." >> $GITHUB_STEP_SUMMARY | |
| echo "" >> $GITHUB_STEP_SUMMARY | |
| echo "🔗 **Site URL:** ${{ steps.deployment.outputs.page_url }}" >> $GITHUB_STEP_SUMMARY |