[CI] Fix submodules and use uv

Author: lukbrb

.github/workflows/test.yml

@@ -8,13 +8,13 @@ on:
 
 jobs:
   build-and-test:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        os: [ubuntu-latest, macos-latest]
+    runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
+        with:
+          submodules: 'recursive'
+          fetch-depth: 0
 
       - name: Install build dependencies (Linux)
         if: runner.os == 'Linux'
@@ -34,14 +34,17 @@ jobs:
         with:
           python-version: '3.10'
 
-      - name: Install Python test dependencies
+      - name: Install UV and sync environment
         run: |
           python -m pip install --upgrade pip
-          python -m pip install "h5py>=3.15.1" "pytest>=9.0.2" "tqdm>=4.67.1" uv
+          python -m pip install uv
+          cd tests
+          uv sync
 
-      - name: Run tests with uv
+      - name: Run tests with uv (from tests directory)
         run: |
-          uv run python -m pytest -q tests
+          cd tests
+          uv run pytest -q
         env:
           PYTHONPATH: "${{ github.workspace }}"