Dev (#5)

* remove unused figures

* header fix

* update polartoolkit version

* update ice shelf plots

* update website pages

* don't save unused plots

* add todo note to code for future

* add more explanation to notebooks

* style: pre-commit fixes

* change file location for Ross Sea outline shapefile

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: mdtanker

README.md

@@ -34,7 +34,7 @@ Then install the environment defined in `pyproject.toml` with:
 pixi install
 ```
 
-## `conda` or `mamba`
+### `conda` or `mamba`
 
 Install the required dependencies with either `conda` or `mamba`:
 

docs/01_with_density_CV.ipynb

@@ -321,7 +321,7 @@
     "    geometry=[shapely.geometry.Polygon(zip(df.easting, df.northing, strict=False))],\n",
     ")\n",
     "polygon = gdf.geometry.envelope.buffer(-30e3).buffer(27e3)\n",
-    "polygon.to_file(\"../results/Ross_Sea_outline.shp\")\n",
+    "polygon.to_file(\"../results/Ross_Sea/Ross_Sea_outline.shp\")\n",
     "polygon.iloc[0]"
    ]
   },
@@ -495,7 +495,7 @@
     "    shape=(6, 7),\n",
     "    region=inversion_region,\n",
     "    padding=-spacing,\n",
-    "    shapefile=\"../results/Ross_Sea_outline.shp\",\n",
+    "    shapefile=\"../results/Ross_Sea/Ross_Sea_outline.shp\",\n",
     "    add_outside_points=True,\n",
     "    grid_spacing=spacing,\n",
     "    plot=True,\n",
@@ -619,7 +619,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": null,
    "id": "2fd67007",
    "metadata": {},
    "outputs": [
@@ -639,7 +639,7 @@
    "source": [
     "# mask to the ice shelf outline\n",
     "min_dist = polar_utils.mask_from_shp(\n",
-    "    shapefile=\"../results/Ross_Sea_outline.shp\",\n",
+    "    shapefile=\"../results/Ross_Sea/Ross_Sea_outline.shp\",\n",
     "    grid=min_dist,\n",
     "    invert=False,\n",
     "    masked=True,\n",

docs/02_with_noise.ipynb

@@ -880,7 +880,7 @@
     "    shape=(6, 7),\n",
     "    region=inversion_region,\n",
     "    padding=-spacing,\n",
-    "    shapefile=\"../results/Ross_Sea_outline.shp\",\n",
+    "    shapefile=\"../results/Ross_Sea/Ross_Sea_outline.shp\",\n",
     "    add_outside_points=True,\n",
     "    grid_spacing=spacing,\n",
     ")\n",

docs/03_with_airborne_survey.ipynb

@@ -5775,7 +5775,7 @@
     "    shape=(6, 7),\n",
     "    region=inversion_region,\n",
     "    padding=-spacing,\n",
-    "    shapefile=\"../results/Ross_Sea_outline.shp\",\n",
+    "    shapefile=\"../results/Ross_Sea/Ross_Sea_outline.shp\",\n",
     "    add_outside_points=True,\n",
     "    grid_spacing=spacing,\n",
     ")\n",

docs/04_with_regional.ipynb

@@ -765,7 +765,7 @@
     "    shape=(6, 7),\n",
     "    region=inversion_region,\n",
     "    padding=-spacing,\n",
-    "    shapefile=\"../results/Ross_Sea_outline.shp\",\n",
+    "    shapefile=\"../results/Ross_Sea/Ross_Sea_outline.shp\",\n",
     "    add_outside_points=True,\n",
     "    grid_spacing=spacing,\n",
     ")\n",