container ID Logik Recommender restart aufter upgrade attempt

[jorgeBIH]

hello,
I just tried to upgrade inception-idlogik-recommender:0.2.2 to v0.2.3 by doing the following:

sudo cd /path/to/logik_recommender/
sudo vim -c ':%s/:0\.2\.2/:0\.2\.3/' -c ':wq' docker-compose.yml
sudo docker compose down
sudo docker compose up -d

but

sudo docker ps
CONTAINER ID   IMAGE                                                                             COMMAND                  CREATED          STATUS                                  PORTS                                                                                      NAMES                                     
3b3c748f83e1   ghcr.io/medizininformatik-initiative/gemtex/inception-idlogik-recommender:0.2.3   "java -jar id-logik-…"   26 minutes ago   Restarting (1) Less than a second ago                                                                                              logik_recommender-id-logik-recommender-1

logs propose the following:

The bean 'messageConverters', defined in class path resource [org/springframework/boot/http/converter/autoconfigure/HttpMessageConvertersAutoConfiguration.class], could not be registered. A bean with that name has already been defined in class path resource [org/springframework/boot/autoconfigure/http/HttpMessageConvertersAutoConfiguration.class] and overriding is disabled.

Action:

Consider renaming one of the beans or enabling overriding by setting spring.main.allow-bean-definition-overriding=true

full log:

$ sudo docker logs -f logik_recommender-id-logik-recommender-1

....

  .   ____          _            __ _ _
 /\\ / ___'_ __ _ _(_)_ __  __ _ \ \ \ \
( ( )\___ | '_ | '_| | '_ \/ _` | \ \ \ \
 \\/  ___)| |_)| | | | | || (_| |  ) ) ) )
  '  |____| .__|_| |_|_| |_\__, | / / / /
 =========|_|==============|___/=/_/_/_/                                                                                                                     :: Spring Boot ::                (v3.1.5)                                                                                                                                                                                                                                                                              2025-09-05T09:24:11.839Z  INFO 1 --- [           main] c.i.i.InceptionRecommenderApplication    : Starting InceptionRecommenderApplication v0.2.1 using Java
 17.0.16 with PID 1 (/inception_idlogik_recommender/id-logik-recommender.jar started by root in /inception_idlogik_recommender)
2025-09-05T09:24:11.841Z  INFO 1 --- [           main] c.i.i.InceptionRecommenderApplication    : No active profile set, falling back to 1 default profile:
"default"
2025-09-05T09:24:12.160Z  WARN 1 --- [           main] ConfigServletWebServerApplicationContext : Exception encountered during context initialization - canc
elling refresh attempt: org.springframework.beans.factory.support.BeanDefinitionOverrideException: Invalid bean definition with name 'messageConverters' defined in class path resource [org/springframework/boot/http/converter/autoconfigure/HttpMessageConvertersAutoConfiguration.class]: Cannot register bean definition [Root bean: class [null]; scope=; abstract=false; lazyInit=null; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBean
Name=org.springframework.boot.http.converter.autoconfigure.HttpMessageConvertersAutoConfiguration; factoryMethodName=messageConverters; initMethodNames=null
; destroyMethodNames=[(inferred)]; defined in class path resource [org/springframework/boot/http/converter/autoconfigure/HttpMessageConvertersAutoConfigurat
ion.class]] for bean 'messageConverters' since there is already [Root bean: class [null]; scope=; abstract=false; lazyInit=null; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=org.springframework.boot.autoconfigure.http.HttpMessageConvertersAutoConfiguration; factoryMethodName=messageConverters; initMethodNames=null; destroyMethodNames=[(inferred)]; defined in class path resource [org/springframework/boot/autoconfigure/http/HttpMessageConvertersAutoConfiguration.class]] bound.                                                                                                    2025-09-05T09:24:12.170Z  INFO 1 --- [           main] .s.b.a.l.ConditionEvaluationReportLogger :

Error starting ApplicationContext. To display the condition evaluation report re-run your application with 'debug' enabled.                                 2025-09-05T09:24:12.180Z ERROR 1 --- [           main] o.s.b.d.LoggingFailureAnalysisReporter   :

***************************
APPLICATION FAILED TO START
***************************

Description:

The bean 'messageConverters', defined in class path resource [org/springframework/boot/http/converter/autoconfigure/HttpMessageConvertersAutoConfiguration.class], could not be registered. A bean with that name has already been defined in class path resource [org/springframework/boot/autoconfigure/http/HttpMessageConvertersAutoConfiguration.class] and overriding is disabled.

Action:

Consider renaming one of the beans or enabling overriding by setting spring.main.allow-bean-definition-overriding=true

I have stopped the container.

how shall we proceed?

[fmatthies]

A temporary fix for this would be to do what the logs propose and add the following to the compose file:

services:
  [...]
    [...]
    environment:
      - spring.main.allow-bean-definition-overriding=true

This shouldn't impede the functioning of the recommender. I probably need to check the dependencies for the id-logik-recommender to fix this permanently.