README.txt

To download and test this repository, log on to summit AND scompile (ssh scompile), 
followed by:

$ cd /projects/$USER
$ git clone https://github.com/meekrob/summit-rna-seq-setup.git
$ cd summit-rna-seq-setup
$ make setup

First, it will test the suitability of the command:

source activate.bashrc

to run the necessary programs. If it passes, it will be sufficient 
to setup any pipeline and should be run before any analysis programs
are invoked.

Second, it will make links to the scratch space on summit for processing data. 
Because file sizes are so large, we cannot use our home directory space or the 
project space to store and process data. 

Lastly, it will run a script that submits a small test job that should not fail,
thereby testing for configuration issues.  It will report the outcome of the 
test and email for help if it fails.