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lines changed Original file line number Diff line number Diff line change @@ -11,15 +11,9 @@ conda install -y ipykernel nbformat nbconvert black jupytext ipywidgets --name 0
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# conda activate sometimes doesn't work from within shell scripts.
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# install viscy and its dependencies`s in the environment using pip.
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- mkdir -p ~ /code/
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- cd ~ /code/
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- git clone https://github.com/mehta-lab/viscy.git
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- cd viscy
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- git checkout main # FIXME: change after merging this PR # Exercise is tested with this commit of viscy
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-
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# Find path to the environment - conda activate doesn't work from within shell scripts.
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ENV_PATH=$( conda info --envs | grep 06_image_translation | awk ' {print $NF}' )
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- $ENV_PATH /bin/pip install " . [metrics] "
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+ $ENV_PATH /bin/pip install " viscy [metrics,visual]==0.2.0 "
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# Create the directory structure
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mkdir -p ~ /data/06_image_translation/training
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