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from viscy .translation .predict_writer import HCSPredictionWriter
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# %%
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+ # NOTE: Nothing needs to be changed in this code block for the example to work.
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+ # If using your own data, please modify the paths below.
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+
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# TODO: Set download paths, by default the working directory is used
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root_dir = Path ()
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- # TODO: modify the path to the downloaded dataset
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+ # TODO: modify the path to the input dataset
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input_data_path = root_dir / "a549_hoechst_cellmask_test.zarr"
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- # TODO: modify the path to the downloaded checkpoint
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+ # TODO: modify the path to the model checkpoint
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model_ckpt_path = root_dir / "epoch=399-step=23200.ckpt"
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# TODO: modify the path to save the predictions
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output_path = root_dir / "a549_prediction.zarr"
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