ruff check

Author: srivarra

viscy/representation/evaluation/dimensionality_reduction.py

@@ -78,7 +78,9 @@ def compute_phate(
     return phate_model, phate_embedding
 
 
-def compute_pca(embedding_dataset: NDArray | Dataset, n_components=None, normalize_features=True):
+def compute_pca(
+    embedding_dataset: NDArray | Dataset, n_components=None, normalize_features=True
+):
     """Compute PCA embeddings for features and optionally update dataset.
 
     Parameters

viscy/representation/evaluation/distance.py

@@ -11,9 +11,9 @@ def calculate_cosine_similarity_cell(
     embedding_dataset: Dataset, fov_name: str, track_id: int
 ) -> tuple[NDArray, NDArray]:
     """
-    
+
     Extract embeddings and calculate cosine similarities for a specific cell
-    
+
     Parameters
     ----------
     embedding_dataset : Dataset