CHR_GTAA_Diversity/pyproject.toml at main · melvinwevers/CHR_GTAA_Diversity · GitHub

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[project]
name = "gtaa-phylogenetic-diversity"
version = "0.1.0"
description = "Archival bias detection using Faith's Phylogenetic Diversity metrics applied to GTAA vocabulary"
authors = [
    {name = "Melvin Wevers", email = "melvin.wevers@uva.nl"}
]
readme = "README.md"
requires-python = ">=3.9"
dependencies = [
    "pandas>=2.0.0",
    "networkx>=3.0",
    "numpy>=1.24.0,<2.0.0",
    "matplotlib>=3.7.0",
    "seaborn>=0.12.0",
    "tqdm>=4.65.0",
    "jupyter>=1.0.0",
    "ipykernel>=6.0.0",
    "pyarrow>=16.0.0",
    "scikit-learn>=1.3.0",
    "scipy>=1.11.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0.0",
    "black>=23.0.0",
    "isort>=5.12.0",
    "mypy>=1.0.0",
    "ruff>=0.1.0",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src"]

[tool.uv]
dev-dependencies = [
    "pytest>=7.0.0",
    "black>=23.0.0",
    "isort>=5.12.0",
    "mypy>=1.0.0",
    "ruff>=0.1.0",
]

[tool.black]
line-length = 88
target-version = ['py39']

[tool.isort]
profile = "black"
multi_line_output = 3

[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true

[tool.ruff]
target-version = "py39"
line-length = 88
select = ["E", "F", "I", "N", "W", "B", "C4", "UP"]
ignore = ["E501", "B008"]