Use adapt_common (#171)

Now that we've started moving things over to
https://github.com/mesh-adaptation/adapt_common, we can drop them from
Movement.

~~I'm currently using the `docs` branch
https://github.com/mesh-adaptation/docs/tree/install-submodules so that
`adapt_common` gets installed properly in the CI.~~

I switched the `monge_ampere_helmholtz.py` demo to use Clement recovery
because this is targeted first for porting to `adapt_common` and (in my
opinion) it gives results of similar quality but quicker. However, I
haven't included Clement interpolation in the port yet because it will
require a bit more work.

I've also updated the `CODEOWNERS` file because I finally got round to
changing my GitHub username.

Author: joewallwork

.github/CODEOWNERS

@@ -3,7 +3,7 @@
 # These owners will be the default owners for everything in
 # the repo. Unless a later match takes precedence,
 # will be requested for review when someone opens a pull request.
-*      @jwallwork23 @stephankramer
+*      @joewallwork @stephankramer
 
 # Order is important; the last matching pattern takes the most
 # precedence. When someone opens a pull request that only

.github/workflows/test_suite.yml

@@ -9,6 +9,7 @@ on:
       - '**.py'
       - '**.geo'
       - '.github/workflows/test_suite.yml'
+      - '.gitmodules'
       - 'pyproject.toml'
 
   # Run test suite whenever commits are pushed to an open PR
@@ -17,6 +18,7 @@ on:
       - '**.py'
       - '**.geo'
       - '.github/workflows/test_suite.yml'
+      - '.gitmodules'
       - 'pyproject.toml'
 
   # Run test suite every Sunday at 1AM

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "adapt_common"]
+	path = adapt_common
+	url = https://github.com/mesh-adaptation/adapt_common.git

adapt_common

@@ -9,7 +9,7 @@
 import firedrake.exceptions as fexc
 import numpy as np
 import ufl
-from animate.utility import cofunction2function, function2cofunction
+from adapt_common.utility import cofunction2function, function2cofunction
 from firedrake.petsc import PETSc
 from pyadjoint import no_annotations
 

demos/monge_ampere_helmholtz.py

@@ -1,8 +1,8 @@
 import abc
 
 import ufl
+from adapt_common.norms import norm
 from animate.recovery import recover_gradient_l2, recover_hessian_clement
-from animate.utility import norm
 from firedrake import SpatialCoordinate
 from firedrake.constant import Constant
 from firedrake.function import Function

movement/monge_ampere.py

@@ -5,7 +5,11 @@
 import firedrake.exceptions as fexc
 import numpy as np
 import ufl
-from animate.utility import function_data_max, function_data_min, function_data_sum
+from adapt_common.reduction import (
+    function_data_max,
+    function_data_min,
+    function_data_sum,
+)
 from firedrake.cython.dmcommon import create_section
 from firedrake.petsc import PETSc
 

movement/monitor.py

@@ -3,7 +3,7 @@ requires = ["setuptools"]
 
 [project]
 name = "movement"
-version = "0.2"
+version = "0.3"
 authors = [
   {name = "Joseph G. Wallwork", email = "[email protected]"},
   {name = "Stephan C. Kramer"},
@@ -43,7 +43,10 @@ Documentation = "https://mesh-adaptation.github.io/movement/index.html"
 Repository = "https://github.com/mesh-adaptation/movement"
 
 [tool.setuptools]
-packages = ["movement"]
+packages = ["movement", "adapt_common"]
+
+[tool.setuptools.package-dir]
+adapt_common = "adapt_common/adapt_common"
 
 [tool.ruff]
 line-length = 88