2025-10-02 WG meeting

[mogres]

Previous WG discussion: #389

Agenda

• cellPACK manuscript status updates
• cellPACK website status updates
• cellPACK core package status updates

Updates

Manuscript

• Positive feedback on figures and story
• Many suggestions on figure layout and design - subject to change
• New tasks
  • mesoscope/cellpack-punctate-manuscript#28
  • mesoscope/cellpack-punctate-manuscript#29
  • mesoscope/cellpack-punctate-manuscript#30
  • mesoscope/cellpack-punctate-manuscript#31
  • Update README cellpack-analysis#21

Website

• Dark mode preview!!
• Design updates
• Update mapping from gradient strength input to decay_length recipe entry AllenCell/cellpack-client#99

Core package

• Improve upload_results workflow for new users without credentials #398
• clean up example recipes and configs #399
• Update aicsimageio to bioio #392
• Update documentation #300
  • On pause

Action Items

• @mogres: run cross structure packings
• @mogres: Add interpolation figure, share with team, writeup in the v2 manuscript draft
• Team: go over figures and manuscript
• @jcass11: test installation of cellpack-analysis
• @rugeli work on validation improvement and testing pipeline
  • both standalone validation command and automatic validation during packing support all v1, v2, firebase, github recipes (PR opened validate recipes during load #402)
  • make testing smooth for users without AWS/firebase credentials. Provide helpful messages/links, consistent error handling, well- structured config option to skip db interactions, up-to-date documentation, etc.
  • Team: go over and update the example recipes and configs