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Update README.md
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README.md

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@@ -79,7 +79,7 @@ meteor download -i <name> -c --fast -o <refdir>
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Meteor requires a first of fastq indexing:
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```
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meteor fastq -i <fastqdir> [-p paired reads] -n <projectname> -o <outputdir>
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meteor fastq -i <fastqdir> [-p paired reads] -o <outputdir>
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```
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When multiple sequencing are available for a library, the option -m allows to group these samples.
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Example:
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In this case, the following command will group these samples the same library:
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```
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meteor fastq -i ./ -m SAMPLE_\\d+ -n projectname -o outputdir
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meteor fastq -i ./ -m SAMPLE_\\d+ -o outputdir
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```
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### 3. Mapping

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