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Small fix
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pf2rnaseq/imports.py

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -134,12 +134,11 @@ def import_Heiser(deviance=False) -> anndata.AnnData:
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data = anndata.read_h5ad("/home/nicoleb/C3TAg.h5ad")
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if deviance:
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# Apply deviance transformation
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data = prepare_dataset_deviance(data, "sample_id", geneThreshold=0.1)
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return prepare_dataset_deviance(data, "sample_id", geneThreshold=0.1)
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else:
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# Apply standard normalization and scaling
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data = prepare_dataset(data, "sample_id", geneThreshold=0.1)
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return prepare_dataset(data, "sample_id", geneThreshold=0.1)
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return prepare_dataset(data, "sample_id", geneThreshold=0.1)
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def import_MouseImmune() -> anndata.AnnData:

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